ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 8.9.1

Subclass Accession number: 5038
Subclass: 8.9.1

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 5

Average sequence ID (%) : 44.8 +/- 30.1
Average RMSD (Å) : 0.480 +/- 0.164

Consensus geometry

d (Å): 29

delta (°): 0-45

theta (°): 45-90

rho (°): 45-90

Consensus Sequence:	XXFWXhEphXhS
(φψ)-conformation:	aapbbaaabpaa

Pattern:	[deh]	x	x	x	[ekq]	[lmv]	[iwy]	[dekn]	[kr]	x	x	[ags]	x	[f]	[w]	x	[ap]	[e]	[ek]	[iv]	[dp]	[lv]	[s]	[knr]	[d]	x	x	x	[wy]
Conservation:	-0.094	-1.051	-0.950	-0.975	-0.046	-0.167	-0.189	-0.394	0.350	-0.896	-0.894	-0.362	-0.714	1.375	3.456	-0.857	0.153	0.959	0.147	0.368	0.028	-0.082	0.542	-0.201	1.375	-0.717	-0.934	-0.810	1.583

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1h0o_A_89	1h0o	A	89	117	HDIWQMYKKAEASFWTAEEVDLSKDIQHW	HHHHHHHHHHHHT---GGGS--TTHHHHH	aaaaaaaaaaaaapbbaaabxaaNaaaaa
1kgn_A_27	1kgn	A	27	55	EKDLEVWDRLTGNFWLPEKIPVSNDIQSW	HHHHHHHHHHHHT---GGGS-GGGGHHHH	aaaaaaaaaaaaapbbaaabxaaaaaaaa
1mxr_A_34	1mxr	A	34	62	DIFEKLIEKQLSFFWRPEEVDVSRDRIDY	HHHHHHHHHHHHT---GGGS--TTHHHHH	aaaaaaaaaaaaapbbaaaxxaaaaaaaa
1oqu_C_27	1oqu	C	27	55	EKDLEVWDRLTGNFWLPEKIPVSNDIQSW	HHHHHHHHHHHHT---GGGS--GGGHHHH	aaaaaaaaaaaaapbbaaabxaaaaaaaa
1r2f_A_17	1r2f	A	17	45	DKDLEVWNRLTSNFWLPEKVPLSNDIPAW	HHHHHHHHHHHHT---GGGS-GGGGHHHH	aaaaaaaaaaaaapbbaaabxaaaaaaaa

Clusters included in this Subclass