ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 8.12.1

Subclass Accession number: 5041
Subclass: 8.12.1

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 5

Average sequence ID (%) : 63.0 +/- 20.5
Average RMSD (Å) : 0.260 +/- 0.134

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	pcKpThXGhTLX
(φψ)-conformation:	aapbpaagpbaa

Pattern:	x	[DE]	[ILV]	[FY]	[ADK]	[EKS]	[IL]	[KR]	[ADN]	[KR]	[EKQS]	[T]	[GPS]	x	[G]	[AF]	[T]	[LV]	x	[D]	[IV]	[I]	[Q]	[ST]	[G]	[V]	[DE]
Conservation:	-1.653	0.473	-0.370	0.984	-1.428	-0.839	-0.122	0.184	-1.203	0.243	-0.908	1.040	-1.146	-0.881	1.632	-0.847	1.040	-0.364	-1.418	1.632	0.185	0.449	1.040	-0.199	1.632	0.449	0.393

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1g0w_A_36	1g0w	A	36	62	PELYAELRAKSTPSGFTVDDVIQTGVD	HHHHHHHTT---TT---HHHHHHHHHH	aaaaaaaaaxbxaavxbaaaaaaaaaa
1m15_A_33	1m15	A	33	59	KDVFDSIKNKKTGMGATLLDVIQSGVE	HHHHHHHTT-B-TT--BHHHHHHHHHH	aaaaaaaaaxbxaavxbaaaaaaaaaa
1n16_A_36	1n16	A	36	62	LDIYKKLRDKETPSGFTLDDIIQTGVD	HHHHHHHTT---TT---HHHHHHHHHH	aaaaaaaaaxbxaavxbaaaaaaaaaa
1qh4_A_36	1qh4	A	36	62	LDLYKKLRDRQTSSGFTLDDVIQTGVD	HHHHHHHTT---TT---HHHHHHHHHH	aaaaaaaaaxbxaavxbaaaaaaaaaa
2crk_A_36	2crk	A	36	62	PDLYKKLRDKETPSGFTLDDVIQTGVD	HHHHHHHTT---TTS--HHHHHHHHHH	aaaaaaaaaxbxaagxbaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1m15_A_33	1m15	A	ARGARGININE	S - 56

Clusters included in this Subclass