Information on SUBCLASS 9.3.1 |
Subclass Accession number: 5070
Subclass: 9.3.1 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 8 Average sequence ID (%) : 65.2 +/- 23.6 Average RMSD (Å) : 0.287 +/- 0.113 Consensus geometry
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Consensus Sequence: | XXGhDcYpGhSLh |
(φψ)-conformation: | aalaplplgppaa |
Pattern: | [kr] | [cq] | [e] | [l] | [ac] | [akr] | [aknt] | [lm] | [kv] | [ars] | x | [g] | [lm] | [dn] | [gn] | [fy] | [hqr] | [g] | [iy] | [st] | [l] | [agp] | [n] | [w] | [mv] | [c] | [almt] | [as] | [efk] | [fhwy] | [e] | [s] |
Conservation: | 0.076 | -0.118 | 0.713 | 0.288 | -0.225 | -0.680 | -1.118 | -0.045 | -0.694 | -0.885 | -1.250 | 1.138 | 0.086 | 0.171 | -0.014 | 0.769 | -0.956 | -0.306 | -1.119 | -0.240 | 0.288 | -0.872 | 1.138 | 3.264 | -0.216 | 2.414 | -1.035 | -0.264 | -1.041 | -0.271 | 0.713 | 0.288 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ghl_A_5 | 1ghl | A | 5 | 36 | RCELAAAMKRMGLDNYRGYSLGNWVCAAKFES | HHHHHHHHHHTT-TTBTTB-HHHHHHHHHHHH | aaaaaaaaaaavaxvxvvbxaaaaaaaaaaaa |
1jse_*_5 | 1jse | - | 5 | 36 | RCELAAAMKRLGLDNYRGYSLGNWVCAAKFES | HHHHHHHHHHTT-TTBTTB-HHHHHHHHHHHH | aaaaaaaaaaavaxvxlvxxaaaaaaaaaaaN |
1jsf_*_5 | 1jsf | - | 5 | 36 | RCELARTLKRLGMDGYRGISLANWMCLAKWES | HHHHHHHHHHTT-TTBTTB-HHHHHHHHHHHH | aaaaaaaaaaavaxvxlvbxaaaaaaaaaaaa |
1jug_*_5 | 1jug | - | 5 | 36 | KQELCKNLVAQGMNGYQHITLPNWVCTAFHES | HHHHHHHHHHTT-TTBTTB-HHHHHHHHHHHH | aaaaaaaaaaavaxvxllxxaaaaaaaaaaaa |
1lmq_*_5 | 1lmq | - | 5 | 36 | RCELARALKASGMDGYAGNSLPNWVCLSKWES | HHHHHHHHHHTT-TTBTTB-HHHHHHHHHHHH | aaaaaaaaaaavaxvxlvbxaaaaaaaaaaaa |
1lsg_*_6 | 1lsg | - | 6 | 37 | RCELAAAMKRHGLDNYRGYSLGNWVCAAKFES | HHHHHHHHHTTT-TTBTTB-THHHHHHHHHHH | aaaaaaaaaaavaxvxlgxxaaaaaaaaaaaN |
1qqy_A_5 | 1qqy | A | 5 | 36 | KCELARKLKSMGMDGFHGYSLANWVCMAEYES | HHHHHHHHHHTT-TTBTTB-HHHHHHHHHHHH | aaaaaaaaaaavaxvxvvxxaaaaaaaaaaaa |
3lzt_*_5 | 3lzt | - | 5 | 36 | RCELAAAMKRHGLDNYRGYSLGNWVCAAKFES | HHHHHHHHHHTT-TTBTTB-HHHHHHHHHHHH | aaaaaaaaaaavaxvplvbpaaaaaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1jse_*_5 | 1jse | * | POLN-PROPANOL | N - 19 |
1jse_*_5 | 1jse | * | POLN-PROPANOL | G - 22 |
1jse_*_5 | 1jse | * | POLN-PROPANOL | Y - 23 |
1jse_*_5 | 1jse | * | POLN-PROPANOL | S - 24 |
1jse_*_5 | 1jse | * | POLN-PROPANOL | L - 25 |
1jse_*_5 | 1jse | * | POLN-PROPANOL | N - 27 |
1lmq_*_5 | 1lmq | * | NAGN-ACETYL-D-GLUCOSAMINE | E - 35 |
3lzt_*_5 | 3lzt | * | ACTACETATE ION | G - 16 |
3lzt_*_5 | 3lzt | * | ACTACETATE ION | Y - 20 |
3lzt_*_5 | 3lzt | * | ACTACETATE ION | R - 21 |
3lzt_*_5 | 3lzt | * | ACTACETATE ION | E - 35 |
Clusters included in this Subclass |
CLUSTER: HH.11.6 |