Information on SUBCLASS 9.29.1 |
Subclass Accession number: 5097
Subclass: 9.29.1 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: Conserved Annotation EC : 3.2 (>75 %) 3.2.1 (>75 %) 3.2.1.17 GO : GO:0003796 (>75 %) GO:0004553 (>75 %) GO:0016798 (>75 %) SCOP : 53954 (>75 %) 53955 (>75 %) 53981 (>75 %) |
Number of loops: 3 Average sequence ID (%) : 90.5 +/- -73.2 Average RMSD (Å) : 0.233 +/- 0.058 Consensus geometry
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Consensus Sequence: | AIGRNXNGVITKD |
(φψ)-conformation: | aalbpallbbpaa |
Pattern: | [L] | [AN] | [A] | [A] | [K] | [AS] | [AE] | [L] | [AD] | [AK] | [A] | [I] | [G] | [R] | [N] | [CT] | [N] | [G] | [V] | [I] | [T] | [K] | [D] | [E] | [A] | [E] | [K] | [L] | [F] | [N] | [Q] | [D] | [V] | [D] | [A] | [A] | [V] | [R] | [G] | [I] | [L] | [R] |
Conservation: | -0.331 | -2.259 | -0.331 | -0.331 | 0.444 | -1.493 | -2.070 | -0.331 | -2.259 | -2.070 | -0.331 | -0.331 | 1.219 | 0.444 | 1.219 | -1.185 | 1.219 | 1.219 | -0.331 | -0.331 | 0.444 | 0.444 | 1.219 | 0.444 | -0.331 | 0.444 | 0.444 | -0.331 | 1.219 | 1.219 | 0.444 | 1.219 | -0.331 | 1.219 | -0.331 | -0.331 | -0.331 | 0.444 | 1.219 | -0.331 | -0.331 | 0.444 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
192l_*_39 | 192l | - | 39 | 80 | LAAAKAALAAAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR | HHHHHHHHHHHHTS--SSB--HHHHHHHHHHHHHHHHHHHHH | aaaaaaaaaaaavbxavvbbxaaaaaaaaaaaaaaaaaaaaa |
1l74_*_39 | 1l74 | - | 39 | 80 | LNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILR | HHHHHHHHHHHHTS--TTB--HHHHHHHHHHHHHHHHHHHHH | aaaaaaaaaaaavbxalvbbxaaaaaaaaaaaaaaaaaaaaa |
1lpy_A_39 | 1lpy | A | 39 | 80 | LNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR | HHHHHHHHHHHHTS--TTB--HHHHHHHHHHHHHHHHHHHHH | aaaaaaaaaaaavbxalvbbxaaaaaaaaaaaaaaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
192l_*_39 | 192l | * | HED2-HYDROXYETHYL DISULFIDE | V - 71 |
192l_*_39 | 192l | * | HED2-HYDROXYETHYL DISULFIDE | V - 75 |
1l74_*_39 | 1l74 | * | SEO2-MERCAPTOETHANOL | V - 71 |
1l74_*_39 | 1l74 | * | SEO2-MERCAPTOETHANOL | V - 75 |
1lpy_A_39 | 1lpy | A | MSESELENOMETHIONINE | V - 71 |
1lpy_A_39 | 1lpy | A | MSESELENOMETHIONINE | A - 73 |
1lpy_A_39 | 1lpy | A | MSESELENOMETHIONINE | A - 74 |
1lpy_A_39 | 1lpy | A | MSESELENOMETHIONINE | V - 75 |
1lpy_A_39 | 1lpy | A | MSESELENOMETHIONINE | G - 77 |
1lpy_A_39 | 1lpy | A | MSESELENOMETHIONINE | I - 78 |
1lpy_A_39 | 1lpy | A | MSESELENOMETHIONINE | L - 79 |
Clusters included in this Subclass |
CLUSTER: HH.8.104 |