ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 10.8.1

Subclass Accession number: 5105
Subclass: 10.8.1

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 1.12 (>75 %)  1.12.2 (>75 %)  1.12.2.1 2.7 (>75 %)  2.7.1 (>75 %)  2.7.1.112
GO : GO:0004672 (>75 %)  GO:0004714 (>75 %)  GO:0004872 (>75 %)  GO:0004888 (>75 %)  GO:0005515 (>75 %)  GO:0005524 (>75 %)  GO:0016301 (>75 %)  GO:0016772 (>75 %)  GO:0016773 (>75 %)  GO:0019199 (>75 %)  GO:0030554 (>75 %)
SCOP : 56111 (>75 %)  56112 (>75 %)  56761 (>75 %)  56762 (>75 %)  56763 (>75 %)  88854 (>75 %)

Number of loops: 4

Average sequence ID (%) : 46.8 +/- 21.4
Average RMSD (Å) : 0.650 +/- 0.191

Consensus geometry

d (Å): 23

delta (°): 90-135

theta (°): 90-135

rho (°): 315-360

Consensus Sequence:	hphhpXPYXXhpNp
(φψ)-conformation:	aallppplaappaa

Pattern:	[ST]	x	[S]	[D]	[IV]	[W]	[AS]	[FY]	[G]	[IV]	[LV]	[LM]	[W]	[E]	[IV]	[AMY]	[ST]	[LY]	[AG]	[EK]	[MQR]	[P]	[Y]	[EQW]	[DEGR]	[FLM]	[ST]	[N]	[EHQS]	[DEQ]	[TV]	[AILM]	[EKNR]	x	[IV]	x
Conservation:	-0.289	-1.119	0.198	0.982	0.019	2.942	-0.340	0.506	0.982	0.006	-0.340	0.006	2.942	0.590	0.006	-1.002	-0.297	-0.542	-0.187	-0.128	-0.706	1.374	1.374	-0.668	-1.076	-0.537	-0.286	0.982	-0.782	-0.262	-0.470	-0.855	-0.708	-1.067	0.020	-1.272

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1jpa_A_813	1jpa	A	813	848	SASDVWSYGIVMWEVMSYGERPYWDMTNQDVINAIE	HHHHHHHHHHHHHHHHTTS--TTTT--HHHHHHHHH	aaaaaaaaaaaaaaaaalvxxpveapxaaaaaaaaa
1k2p_A_576	1k2p	A	576	611	SKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIA	HHHHHHHHHHHHHHHHTTS--TTTTS-HHHHHHHHH	aaaaaaaaaaaaaaaaavvxxxlaaxbaaaaaaaaa
1mqb_A_796	1mqb	A	796	831	SASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAIN	HHHHHHHHHHHHHHHHTTS--TTTT--HHHHHHHHH	aaaaaaaaaaaaaaaaalvxxpveaxxaaaaaaaaa
1p4o_A_1161	1p4o	A	1161	1196	TYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVM	HHHHHHHHHHHHHHHHHTS--TTTTS-HHHHHHHHH	aaaaaaaaaaaaaaaaavvxxxvaabxaaaaaaaaa

Clusters included in this Subclass