ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 10.13.1

Subclass Accession number: 5110
Subclass: 10.13.1

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 3.1 (>75 %)  3.1.26 (>75 %)  3.1.26.4 5.3 (>75 %)  5.3.1 (>75 %)  5.3.1.5
GO : GO:0000287 (>75 %)  GO:0003676 (>75 %)  GO:0003677 (>75 %)  GO:0003723 (>75 %)  GO:0004518 (>75 %)  GO:0004518 (>75 %)  GO:0004519 (>75 %)  GO:0004519 (>75 %)  GO:0004540 (>75 %)  GO:0009045 (>75 %)  GO:0016788 (>75 %)  GO:0016788 (>75 %)  GO:0016853 (>75 %)  GO:0016860 (>75 %)  GO:0016861 (>75 %)  GO:0030145 (>75 %)  GO:0046914 (>75 %)
SCOP : 51658 (>75 %)  51665 (>75 %)  53066 (>75 %)  53098 (>75 %)  53099 (>75 %)

Number of loops: 3

Average sequence ID (%) : 55.6 +/- -1.2
Average RMSD (Å) : 0.700 +/- 0.200

Consensus geometry

d (Å): 15

delta (°): 90-135

theta (°): 45-90

rho (°): 315-360

Consensus Sequence:	XhGphGSGYhSDPp
(φψ)-conformation:	aaepaeagbaapaa

Pattern:	[P]	[LV]	[V]	[AS]	[A]	[A]	[S]	[I]	[IL]	[A]	[K]	[AV]	[ET]	[R]	[DE]	[ER]	x	[IV]	[DE]	[KRY]	[LY]	[K]	[EK]	x	[FY]	[G]	[DE]	[FI]	[G]	[S]	[G]	[Y]	[AP]	[S]	[D]	[P]	[KR]	[T]	x	[AEK]	[FV]	[L]	[EK]	[DEN]	[WY]	[FIY]	[AKR]	[EKS]
Conservation:	2.010	-0.626	0.236	-0.626	0.236	0.236	0.236	0.236	-0.331	0.236	0.827	-0.907	-0.872	0.827	0.168	-0.601	-1.933	-0.048	0.068	-1.276	-0.898	0.827	-0.315	-1.867	0.760	1.419	0.193	-0.709	1.419	0.236	1.419	2.010	-0.593	0.236	1.419	2.010	-0.030	0.827	-1.556	-1.342	-0.795	0.236	-0.322	-0.619	0.981	-0.750	-1.210	-1.079

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1eke_A_153	1eke	A	153	200	PVVSAASIIAKAERDEIIDYYKKIYGDIGSGYPSDPKTIKFLEDYFKK	HHHHHHHHHHHHHHHHHHHHHHHHTS--TTSSTTSHHHHHHHHHHHHH	aaaaaaaaaaaaaaaaaaaaaaaaaepaeavbaapaaaaaaaaaaaaa
1i39_A_133	1i39	A	133	180	PLVAAASIIAKVEREREIERLKEKFGDFGSGYASDPRTREVLKEWIAS	HHHHHHHHHHHHHHHHHHHHHHHHH----SSSTTSHHHHHHHHHHHHH	aaaaaaaaaaaaaaaaaaaaaaaaaexaeagbaapaaaaaaaaaaaaa
1io2_A_139	1io2	A	139	186	PVVSAASILAKVTRDRAVEKLKEEYGEIGSGYPSDPRTRAFLENYYRE	HHHHHHHHHHHHHHHHHHHHHHHHHS---SS-TTSHHHHHHHHHHHHH	aaaaaaaaaaaaaaaaaaaaaaaaaexaeagxaaxaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1eke_A_153	1eke	A	MSESELENOMETHIONINE	R - 166
1eke_A_153	1eke	A	MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID	P - 185

Clusters included in this Subclass