ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 10.17.1

Subclass Accession number: 5114
Subclass: 10.17.1

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 1.12 (>75 %)  1.12.2 (>75 %)  1.12.2.1 1.15 (>50 %)  1.15.1 (>50 %)  1.15.1.1
GO : GO:0004784 (>50 %)  GO:0016721 (>50 %)
SCOP : 46556 (>75 %)  46609 (>75 %)  46610 (>75 %)  54718 (>75 %)  54719 (>75 %)  54720 (>75 %)  56761 (>75 %)  56762 (>75 %)  56763 (>75 %)

Number of loops: 3

Average sequence ID (%) : 48.8 +/- 6.6
Average RMSD (Å) : 0.400 +/- 0.200

Consensus geometry

d (Å): 19

delta (°): 45-90

theta (°): 90-135

rho (°): 135-180

Consensus Sequence:	pXhSPcGGcpPpGp
(φψ)-conformation:	aabbaapeebpbea

Pattern:	[EQR]	[KPT]	[ANT]	[LV]	[AKR]	x	[N]	[GL]	[AG]	[G]	[H]	[ILV]	[N]	[H]	[ST]	[I]	[FW]	[W]	[KQT]	x	[LM]	[S]	[P]	[DN]	[G]	[G]	[DG]	[EKQ]	[P]	[KT]	[G]	[DE]	[IL]	[AL]	[AEQ]	[AE]	[I]	[AKN]	[DQR]	[ADT]	[F]
Conservation:	-0.565	-1.026	-1.026	-0.474	-0.888	-0.847	0.957	-1.146	-0.356	0.957	1.787	-0.427	0.957	1.787	-0.308	0.127	0.286	3.032	-0.934	-0.984	-0.205	0.127	1.372	-0.045	0.957	0.957	-0.427	-0.473	1.372	-0.640	0.957	0.009	-0.274	-0.858	-0.888	-0.806	0.127	-1.119	-0.888	-1.119	0.957

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1gv3_A_104	1gv3	A	104	144	RTTVRNNGGGHLNHTIFWQIMSPDGGGQPTGDIAQEINQTF	HHHHHHHHHHHHHHHHHHHTB-TT--SS--HHHHHHHHHHH	aaaaaaaaaaaaaaaaaaaabbaaxeexpbeaaaaaaaaaa
1ids_A_59	1ids	A	63	103	EKNLAFNLAGHVNHTIWWKNLSPNGGDKPTGELAAAIADAF	HHHHHHHHHHHHHHHHHHHHB-TT--S---HHHHHHHHHHH	aaaaaaaaaaaaaaaaaaaabbaaxeebxbeaaaaaaaaaa
1pl4_A_61	1pl4	A	61	101	QPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDF	HHHHHHHHHHHHHHHHHHHTB-TT--S---HHHHHHHHHHH	aaaaaaaaaaaaaaaaaaaabbaaxeebxbeaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1gv3_A_104	1gv3	A	AC1MN BINDING SITE FOR CHAIN A	H - 117

Clusters included in this Subclass