ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 11.1.1

Subclass Accession number: 5121
Subclass: 11.1.1

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 12

Average sequence ID (%) : 40.7 +/- 25.3
Average RMSD (Å) : 0.550 +/- 0.173

Consensus geometry

d (Å): 23

delta (°): 45-90

theta (°): 90-135

rho (°): 225-270

Consensus Sequence:	ppGXphXXPXcCPXX
(φψ)-conformation:	aagpbppppplppaa

Pattern:	[LV]	[FILMVY]	[deknpqr]	x	[ILV]	[ekmr]	[DEKNQR]	[DG]	x	[kry]	[LM]	[adpv]	x	[P]	[deps]	[DEGN]	[C]	[PT]	[denps]	[aekrst]	[ILV]	[hty]	[denqs]	[LMV]	[M]	[ckrt]	x	[C]
Conservation:	0.308	-0.320	-0.868	-1.042	0.145	-0.500	-0.391	0.361	-0.642	-0.658	0.356	-0.661	-0.947	1.823	-0.667	-0.157	2.599	0.864	-0.788	-0.759	0.110	0.175	-0.454	0.174	1.046	-0.751	-0.958	2.599

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1byg_A_395	1byg	A	395	422	VVPRVEKGYKMDAPDGCPPAVYEVMKNC	HHHHHTTT------TT--HHHHHHHHHH	aaaaaaagpbxxxppvpxaaaaaaaaaa
1fgk_A_706	1fgk	A	709	736	LFKLLKEGHRMDKPSNCTNELYMMMRDC	HHHHHHTT------SS--HHHHHHHHHH	aaaaaaavxbpxxxxvbxaaaaaaaaaa
1fmk_*_468	1fmk	-	471	498	VLDQVERGYRMPCPPECPESLHDLMCQC	HHHHHHTT------TTS-HHHHHHHHHH	aaaaaaagxbpxppxvbxaaaaaaaaaa
1ir3_A_1215	1ir3	A	1218	1245	VLKFVMDGGYLDQPDNCPERVTDLMRMC	HHHHHHTT------TT--HHHHHHHHHH	aaaaaaagxbxxxxplxpaaaaaaaaaa
1jpa_A_840	1jpa	A	843	870	VINAIEQDYRLPPPMDCPSALHQLMLDC	HHHHHHTT------TT--HHHHHHHHHH	aaaaaaavxbpxxppvxwaaaaaaaaaa
1k9a_A_395	1k9a	A	395	422	VVPRVEKGYKMDAPDGCPPAVYDVMKNC	HHHHHHTT------TT--HHHHHHHHHH	aaaaaaavxbpxppxvxxaaaaaaaaaa
1luf_A_807	1luf	A	810	837	VIYYVRDGNILACPENCPLELYNLMRLC	HHHHHHTT------TT--HHHHHHHHHH	aaaaaaavxbxxxxxvxpaaaaaaaaaa
1mp8_A_631	1mp8	A	631	658	VIGRIENGERLPMPPNCPPTLYSLMTKC	HHHHHHTT------TT--HHHHHHHHHH	aaaaaaavxbpxpxpvxpaaaaaaaaaa
1mqb_A_823	1mqb	A	826	853	VMKAINDGFRLPTPMDCPSAIYQLMMQC	HHHHHHTT------TT-BHHHHHHHHHH	aaaaaaavbbxxxxplxpaaaaaaaaaa
1opj_A_464	1opj	A	467	494	VYELLEKDYRMERPEGCPEKVYELMRAC	HHHHHHTT------TT--HHHHHHHHHH	aaaaaaavxbpxxxpvxxaaaaaaaaaa
1p4o_A_1188	1p4o	A	1191	1218	VLRFVMEGGLLDKPDNCPDMLFELMRMC	HHHHHHTT------TT--HHHHHHHHHH	aaaaaaagxbxxxxxvxwaaaaaaaaaa
1qpc_A_446	1qpc	A	449	476	VIQNLERGYRMVRPDNCPEELYQLMRLC	HHHHHHTT------TT--HHHHHHHHHH	aaaaaaagxbpxpxxlxpaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Clusters included in this Subclass