ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 11.8.1

Subclass Accession number: 5128
Subclass: 11.8.1

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 3.1 (>75 %)  3.1.26 (>75 %)  3.1.26.4
GO : GO:0003676 (>75 %)  GO:0003723 (>75 %)  GO:0004069 (>50 %)  GO:0004518 (>75 %)  GO:0004519 (>75 %)  GO:0004540 (>75 %)  GO:0008483 (>75 %)  GO:0016769 (>75 %)  GO:0016788 (>75 %)  GO:0016829 (>75 %)  GO:0016846 (>75 %)  GO:0016847 (>75 %)  GO:0030145 (>75 %)
SCOP : 53066 (>75 %)  53098 (>75 %)  53099 (>75 %)  53382 (>75 %)  53383 (>75 %)  53384 (>75 %)

Number of loops: 3

Average sequence ID (%) : 55.9 +/- -1.7
Average RMSD (Å) : 0.300 +/- 0.000

Consensus geometry

d (Å): 17

delta (°): 90-135

theta (°): 135-180

rho (°): 45-90

Consensus Sequence:	XpGXTpYhPXhGXhp
(φψ)-conformation:	aalpabpbpaaepaa

Pattern:	[EKQ]	[H]	[IV]	[KV]	[E]	[AY]	[A]	[KR]	[AER]	[A]	[L]	[ADE]	[KQ]	[G]	[KL]	[T]	[HKR]	[Y]	[AG]	[P]	[ANP]	[AI]	[G]	x	[LP]	[ER]	[L]	[R]	[E]	[A]	[IL]	[A]	[EQ]	[K]	[FL]	[KQR]	[KR]
Conservation:	-0.521	2.442	0.002	-1.105	0.809	-1.040	0.265	0.020	-1.308	0.265	0.265	-1.126	-0.247	1.354	-1.131	0.809	-0.703	1.898	-0.406	1.898	-1.489	-1.055	1.354	-1.610	-1.020	-0.496	0.265	0.809	0.809	0.265	-0.261	0.265	0.026	0.809	-0.606	-0.521	0.017

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1b5p_A_47	1b5p	A	47	83	EHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRR	HHHHHHHHHHHHTT--S---TT--HHHHHHHHHHHHH	aaaaaaaaaaaaavxabpbxaaexaaaaaaaaaaaaa
1gde_A_42	1gde	A	42	78	QHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKK	HHHHHHHHHHHHTT--S---TT--HHHHHHHHHHHHH	aaaaaaaaaaaaavxabxbwaaexaaaaaaaaaaaaa
1j32_A_46	1j32	A	46	82	KHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQR	HHHHHHHHHHHHTT--S---TT--HHHHHHHHHHHHH	aaaaaaaaaaaaavxabxbxaaexaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Clusters included in this Subclass