ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 11.10.1

Subclass Accession number: 5130
Subclass: 11.10.1

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 1.16 (>75 %)  1.16.3 (>75 %)  1.16.3.1
GO : GO:0004322 (>75 %)  GO:0005375 (>75 %)  GO:0005507 (>75 %)  GO:0008324 (>75 %)  GO:0015075 (>75 %)  GO:0015082 (>75 %)  GO:0016661 (>50 %)  GO:0016662 (>50 %)  GO:0016722 (>75 %)  GO:0016724 (>75 %)  GO:0030151 (>75 %)  GO:0046873 (>75 %)  GO:0046914 (>75 %)  GO:0046915 (>75 %)  GO:0050626 (>50 %)
SCOP : 49502 (>75 %)  49503 (>75 %)  49550 (>75 %)  53705 (>75 %)  53706 (>75 %)  53707 (>75 %)

Number of loops: 3

Average sequence ID (%) : 60.5 +/- -5.2
Average RMSD (Å) : 0.267 +/- 0.115

Consensus geometry

d (Å): 27

delta (°): 90-135

theta (°): 45-90

rho (°): 0-45

Consensus Sequence:	VhGpXEVYXQXTXWP
(φψ)-conformation:	aalbagaabppppaa

Pattern:	[AG]	[Q]	[ITV]	[I]	[LM]	[P]	[HY]	[V]	[LMV]	[G]	[ST]	[LT]	[E]	[V]	[Y]	[AE]	[Q]	[GQ]	[T]	[AS]	[W]	[P]	[LV]	[ILV]	[ALV]	[E]	[HN]
Conservation:	-0.756	0.409	-1.008	-0.047	-0.369	1.319	0.317	-0.047	-0.805	0.864	-0.596	-1.081	0.409	-0.047	1.319	-1.049	0.409	-1.079	0.409	-0.726	3.140	1.319	-0.726	-0.654	-1.261	0.409	-0.072

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1dms_*_151	1dms	-	151	177	AQVIMPHVVGTLEVYEQQTAWPVLAEN	HHHHHHHHTSS--TTS--S-HHHHHHH	aaaaaaaaavbagaabxxppaaaaaaa
1eu1_A_151	1eu1	A	151	177	AQIIMPHVMGTLEVYEQQTAWPVVVEN	HHHHHHHHTSS--TTS--S-HHHHHHH	aaaaaaaaavbagaabpxppaaaaaaa
1tmo_*_153	1tmo	-	153	179	GQTILPYVLGSTEVYAQGTSWPLILEH	HHHHHHHHTSS--TTS----HHHHHHH	aaaaaaaaavbagaaxxbpxaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1dms_*_151	1dms	*	MM4MOLYBDENUM (IV) OXIDE	Y - 165
1eu1_A_151	1eu1	A	EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID	Q - 152
1eu1_A_151	1eu1	A	6MOMOLYBDENUM(VI) ION	Y - 165
1eu1_A_151	1eu1	A	OXBOUND OXYGEN	Y - 165
1eu1_A_151	1eu1	A	EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID	Y - 165
1tmo_*_153	1tmo	*	2MOMOLYBDENUM (IV)OXIDE ION	Y - 167

Clusters included in this Subclass