Logo
Information on SUBCLASS 12.1.1
Subclass Accession number: 5136
Subclass: 12.1.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 6

Average sequence ID (%) : 63.1 +/- 21.5
Average RMSD (Å) : 0.300 +/- 0.126

Consensus geometry
d (Å): 5 delta (°): 0-45 theta (°): 0-45 rho (°): 180-225
Consensus Sequence: MhGXTNPApXhPGTIR
(φψ)-conformation: aaepapaaapppgpaa
Pattern: [av][v]x[ast][agns][r]x[im][ilm][g]x[t][dn][ps][al][adeq][as][akl][ep][g][st][i][r][gk][d][f]
Conservation:-0.4740.484-1.351-0.643-0.9611.013-1.738-0.009-0.2911.542-1.4511.0130.3610.001-0.705-0.961-0.310-1.2300.0281.542-0.0000.4841.013-0.4371.5421.542
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ehw_A_831ehw   A83108VVRASRAMIGHTDSAEAAPGTIRGDFHHHHHHHHH--SSGGGS-TTSHHHHHaaaaaaaaaepaxaaaxxxgxaaaaa
1hlw_A_871hlw   A87112VVASARLMIGVTNPLASAPGSIRGDFHHHHHHHHH--SSGGGS-TTSHHHHHaaaaaaaaaebaxaaaxxpgxaaaaa
1nhk_L_821nhk   L82107AVLANRDIMGATNPAQAAEGTIRKDFHHHHHHHHH--SSGGG--TTSHHHHHaaaaaaaaaepaxaaaxxxvxaaaaa
1nsq_A_841nsq   A84109VVKTGRQMLGATNPADSLPGTIRGDFHHHHHHHHH--SSGGGS-TTSHHHHHaaaaaaaaaexaxaaaxxpgxaaaaa
1nue_A_831nue   A83108VVKTGRVMLGETNPADSKPGTIRGDFHHHHHHHHH--SSGGG--TTSHHHHHaaaaaaaaaexaxaaaxxpgxaaaaa
1ucn_A_831ucn   A83108VVKTGRVMLGETNPADSKPGTIRGDFHHHHHHHHH--SSGGGS-TTSHHHHHaaaaaaaaaepaxaaaxxpgxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1nhk_L_821nhk   L     CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE T - 93
1nhk_L_821nhk   L     CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE R - 104
1nsq_A_841nsq   A     PHSPHOSPHONO GROUP R - 89
1nsq_A_841nsq   A     PHSPHOSPHONO GROUP R - 106
1nue_A_831nue   A     GDPGUANOSINE-5'-DIPHOSPHATE R - 88
1nue_A_831nue   A     MGMAGNESIUM ION R - 88
1nue_A_831nue   A     GDPGUANOSINE-5'-DIPHOSPHATE G - 92
1nue_A_831nue   A     GDPGUANOSINE-5'-DIPHOSPHATE E - 93
1nue_A_831nue   A     GDPGUANOSINE-5'-DIPHOSPHATE T - 94
1nue_A_831nue   A     GDPGUANOSINE-5'-DIPHOSPHATE R - 105
1ucn_A_831ucn   A     PO4PHOSPHATE ION R - 88
1ucn_A_831ucn   A     CACALCIUM ION R - 88
1ucn_A_831ucn   A     ADPADENOSINE-5'-DIPHOSPHATE R - 88
1ucn_A_831ucn   A     ADPADENOSINE-5'-DIPHOSPHATE G - 92
1ucn_A_831ucn   A     ADPADENOSINE-5'-DIPHOSPHATE E - 93
1ucn_A_831ucn   A     ADPADENOSINE-5'-DIPHOSPHATE T - 94
1ucn_A_831ucn   A     ADPADENOSINE-5'-DIPHOSPHATE N - 95
1ucn_A_831ucn   A     PO4PHOSPHATE ION R - 105
1ucn_A_831ucn   A     ADPADENOSINE-5'-DIPHOSPHATE R - 105

Clusters included in this Subclass
CLUSTER: HH.11.14