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Information on SUBCLASS 12.4.1
Subclass Accession number: 5139
Subclass: 12.4.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0004096 (>75 %)  GO:0004601 (>75 %)  GO:0016684 (>75 %)  
SCOP : 48112 (>75 %)  48113 (>75 %)  74753 (>75 %)  
 Number of loops: 3

Average sequence ID (%) : 76.5 +/- -37.7
Average RMSD (Å) : 0.167 +/- 0.058

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 90-135 rho (°): 0-45
Consensus Sequence: MTpSQDWWPADhGHYG
(φψ)-conformation: aabpbaabpppUlbaa
Pattern: [K][QRS][D][L][EHQ][AE][L][M][T][DST][S][Q][D][W][W][P][A][D][FWY][G][H][Y][G][GP][L][FM][I][R][LM][AT][W][H][AS][A]
Conservation:-0.006-1.3510.385-0.396-1.004-1.283-0.396-0.006-0.006-1.307-0.396-0.0060.3852.3382.3380.775-0.3960.385-0.3960.3851.1660.7750.385-1.081-0.396-0.861-0.396-0.006-0.669-1.0902.3381.166-0.978-0.396
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1itk_A_611itk   A6598KSDLEELMTSSQDWWPADYGHYGPLFIRMAWHSAHHHHHHHHT--BTTB--GGG--HHHHHHHHHHHHaaaaaaaaabxbaabpxxUvbaaaaaaaaaaaaa
1mwv_A_771mwv   A81114KRDLHALMTTSQDWWPADFGHYGGLFIRMAWHSAHHHHHHHHT--BTTB--GGG--HHHHHHHHHHHHaaaaaaaaabxxaabpxpUvbaaaaaaaaaaaaa
1ub2_A_631ub2   A6396KQDLQALMTDSQDWWPADWGHYGGLMIRLTWHAAHHHHHHHTT---TTS--GGG--HHHHHHHHHHHHaaaaaaaaabpbaabpxxlvbaaaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1itk_A_611itk   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 82
1itk_A_611itk   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 83
1itk_A_611itk   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 87
1itk_A_611itk   A     HEMPROTOPORPHYRIN IX CONTAINING FE P - 88
1itk_A_611itk   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 89
1itk_A_611itk   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 91
1itk_A_611itk   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 92
1itk_A_611itk   A     HEMPROTOPORPHYRIN IX CONTAINING FE W - 95
1itk_A_611itk   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 96
1mwv_A_771mwv   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 98
1mwv_A_771mwv   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 103
1mwv_A_771mwv   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 104
1mwv_A_771mwv   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 105
1mwv_A_771mwv   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 106
1mwv_A_771mwv   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 107
1mwv_A_771mwv   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 108
1mwv_A_771mwv   A     HEMPROTOPORPHYRIN IX CONTAINING FE W - 111
1mwv_A_771mwv   A     PEOHYDROGEN PEROXIDE W - 111
1mwv_A_771mwv   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 112
1mwv_A_771mwv   A     PEOHYDROGEN PEROXIDE H - 112
1ub2_A_631ub2   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 80
1ub2_A_631ub2   A     HEMPROTOPORPHYRIN IX CONTAINING FE W - 81
1ub2_A_631ub2   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 85
1ub2_A_631ub2   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 86
1ub2_A_631ub2   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 87
1ub2_A_631ub2   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 88
1ub2_A_631ub2   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 89
1ub2_A_631ub2   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 90
1ub2_A_631ub2   A     HEMPROTOPORPHYRIN IX CONTAINING FE W - 93
1ub2_A_631ub2   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 94

Clusters included in this Subclass
CLUSTER: HH.14.23