Information on SUBCLASS 12.4.1 |
Subclass Accession number: 5139
Subclass: 12.4.1 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0004096 (>75 %) GO:0004601 (>75 %) GO:0016684 (>75 %) SCOP : 48112 (>75 %) 48113 (>75 %) 74753 (>75 %) |
Number of loops: 3 Average sequence ID (%) : 76.5 +/- -37.7 Average RMSD (Å) : 0.167 +/- 0.058 Consensus geometry
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Consensus Sequence: | MTpSQDWWPADhGHYG |
(φψ)-conformation: | aabpbaabpppUlbaa |
Pattern: | [K] | [QRS] | [D] | [L] | [EHQ] | [AE] | [L] | [M] | [T] | [DST] | [S] | [Q] | [D] | [W] | [W] | [P] | [A] | [D] | [FWY] | [G] | [H] | [Y] | [G] | [GP] | [L] | [FM] | [I] | [R] | [LM] | [AT] | [W] | [H] | [AS] | [A] |
Conservation: | -0.006 | -1.351 | 0.385 | -0.396 | -1.004 | -1.283 | -0.396 | -0.006 | -0.006 | -1.307 | -0.396 | -0.006 | 0.385 | 2.338 | 2.338 | 0.775 | -0.396 | 0.385 | -0.396 | 0.385 | 1.166 | 0.775 | 0.385 | -1.081 | -0.396 | -0.861 | -0.396 | -0.006 | -0.669 | -1.090 | 2.338 | 1.166 | -0.978 | -0.396 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1itk_A_61 | 1itk | A | 65 | 98 | KSDLEELMTSSQDWWPADYGHYGPLFIRMAWHSA | HHHHHHHHT--BTTB--GGG--HHHHHHHHHHHH | aaaaaaaaabxbaabpxxUvbaaaaaaaaaaaaa |
1mwv_A_77 | 1mwv | A | 81 | 114 | KRDLHALMTTSQDWWPADFGHYGGLFIRMAWHSA | HHHHHHHHT--BTTB--GGG--HHHHHHHHHHHH | aaaaaaaaabxxaabpxpUvbaaaaaaaaaaaaa |
1ub2_A_63 | 1ub2 | A | 63 | 96 | KQDLQALMTDSQDWWPADWGHYGGLMIRLTWHAA | HHHHHHHTT---TTS--GGG--HHHHHHHHHHHH | aaaaaaaaabpbaabpxxlvbaaaaaaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Clusters included in this Subclass |
CLUSTER: HH.14.23 |