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Information on SUBCLASS 16.2.1
Subclass Accession number: 5164
Subclass: 16.2.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 2.5 (>75 %)  2.5 (>75 %)  2.5.1 (>75 %)  2.5.1 (>75 %)  
GO : GO:0004659 (>75 %)  GO:0004659 (>75 %)  GO:0008318 (>75 %)  GO:0008318 (>75 %)  GO:0016765 (>75 %)  GO:0016765 (>75 %)  
SCOP : 48207 (>75 %)  48207 (>75 %)  48239 (>75 %)  48239 (>75 %)  48246 (>75 %)  48246 (>75 %)  
 Number of loops: 5

Average sequence ID (%) : 20.5 +/- 17.9
Average RMSD (Å) : 1.200 +/- 0.485

Consensus geometry
d (Å): 13 delta (°): 45-90 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: pXpphpGXhhhXhGhXhphX
(φψ)-conformation: aappaagpbbabpgpppbaa
Pattern: [AILT]x[EQRSW][WY][IL][acly][EHRS][cers][KMQ][nqrs]x[DES][GN][GST][FILW][agl][glm]x[APV][EG][GKLM][ep][APSV][DH][GLV][dgr][STY][AST][FIWY][CEW][AGV][AILY][ASV][ASV][AL][ckv][ILY]
Conservation:-0.290-1.339-0.6773.0701.346-1.087-0.134-1.2760.665-0.803-0.6701.1831.9640.390-0.023-0.895-1.026-1.1810.3731.339-1.085-0.424-0.4231.288-0.809-1.036-0.1680.7280.6760.353-0.122-0.3870.2260.0470.629-0.8060.383
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dce_B_2121dce   B215251LGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIHHHHHHTTB-TTS-B-SSTT----HHHHHHHHHHHHHaaaaaaaaxxaavxbbabpvbxwbaaaaaaaaaaaaa
1ld8_B_6741ld8   B677713LLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLHHHHHHHHB-TTS-BBSSTT--B-HHHHHHHHHHHHHaaaaaaaaxxaavxbxabpvbxbbaaaaaaaaaaaaa
1ld8_B_7251ld8   B725761TAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVIHHHHHHHHB-TTSSB-SSTTS---HHHHHHHHHHHHHaaaaaaaaxbaagxbbabpgxpxbaaaaaaaaaaaaa
1n4q_B_1931n4q   B196232AISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLHHHHHHHTB-TTSSBBSSTTS-B-HHHHHHHHHHHHHaaaaaaaaxxaavxbbabpvxxxbaaaaaaaaaaaaa
2sqc_A_582sqc   A64100IRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYHHHHHHHHS-TTS---SSTT----HHHHHHHHHHHHHaaaaaaaaxxaavbbbabxvxxpbaaaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dce_B_2121dce   B     ZNZINC ION D - 238
1dce_B_2121dce   B     ZNZINC ION V - 239
1dce_B_2121dce   B     ZNZINC ION C - 240
1dce_B_2121dce   B     ZNZINC ION Y - 241
1dce_B_2121dce   B     ZNZINC ION W - 244
1ld8_B_6741ld8   B     FPPFARNESYL DIPHOSPHATE M - 693
1ld8_B_6741ld8   B     FPPFARNESYL DIPHOSPHATE R - 702
1ld8_B_6741ld8   B     U49(20S)-19,20,21,22-TETRAHYDRO-19-OXO-5H-18,20-ETHANO-12,14-ETHENO-6,10-METHENO-18H-BENZ[D]IMIDAZO[4,3-K][1, 6,9,12]OXATRIAZA-CYCLOOCTADECOSINE-9-CARBONITRILE R - 702
1ld8_B_6741ld8   B     FPPFARNESYL DIPHOSPHATE Y - 705
1ld8_B_6741ld8   B     FPPFARNESYL DIPHOSPHATE C - 706
1ld8_B_7251ld8   B     SUCSUCROSE A - 730
1ld8_B_7251ld8   B     SUCSUCROSE R - 731
1ld8_B_7251ld8   B     SUCSUCROSE C - 732
1ld8_B_7251ld8   B     SUCSUCROSE Q - 733
1ld8_B_7251ld8   B     SUCSUCROSE N - 734
1ld8_B_7251ld8   B     SUCSUCROSE W - 735
1ld8_B_7251ld8   B     SUCSUCROSE E - 736
1ld8_B_7251ld8   B     SUCSUCROSE G - 737
1ld8_B_7251ld8   B     SUCSUCROSE G - 738
1ld8_B_7251ld8   B     FPPFARNESYL DIPHOSPHATE H - 748
1ld8_B_7251ld8   B     U49(20S)-19,20,21,22-TETRAHYDRO-19-OXO-5H-18,20-ETHANO-12,14-ETHENO-6,10-METHENO-18H-BENZ[D]IMIDAZO[4,3-K][1, 6,9,12]OXATRIAZA-CYCLOOCTADECOSINE-9-CARBONITRILE H - 748
1ld8_B_7251ld8   B     FPPFARNESYL DIPHOSPHATE G - 749
1ld8_B_7251ld8   B     FPPFARNESYL DIPHOSPHATE G - 750
1ld8_B_7251ld8   B     FPPFARNESYL DIPHOSPHATE Y - 751
1ld8_B_7251ld8   B     U49(20S)-19,20,21,22-TETRAHYDRO-19-OXO-5H-18,20-ETHANO-12,14-ETHENO-6,10-METHENO-18H-BENZ[D]IMIDAZO[4,3-K][1, 6,9,12]OXATRIAZA-CYCLOOCTADECOSINE-9-CARBONITRILE Y - 751
1ld8_B_7251ld8   B     FPPFARNESYL DIPHOSPHATE C - 754
1n4q_B_1931n4q   B     MGM2-[METHYL-(5-GERANYL-4-METHYL-PENT-3-ENYL)-AMINO]-ETHYL-DIPHOSPHATE Q - 212
1n4q_B_1931n4q   B     MGM2-[METHYL-(5-GERANYL-4-METHYL-PENT-3-ENYL)-AMINO]-ETHYL-DIPHOSPHATE H - 219
1n4q_B_1931n4q   B     MGM2-[METHYL-(5-GERANYL-4-METHYL-PENT-3-ENYL)-AMINO]-ETHYL-DIPHOSPHATE G - 220
1n4q_B_1931n4q   B     MGM2-[METHYL-(5-GERANYL-4-METHYL-PENT-3-ENYL)-AMINO]-ETHYL-DIPHOSPHATE G - 221
1n4q_B_1931n4q   B     MGM2-[METHYL-(5-GERANYL-4-METHYL-PENT-3-ENYL)-AMINO]-ETHYL-DIPHOSPHATE S - 222
1n4q_B_1931n4q   B     MGM2-[METHYL-(5-GERANYL-4-METHYL-PENT-3-ENYL)-AMINO]-ETHYL-DIPHOSPHATE C - 225

Clusters included in this Subclass
CLUSTER: HH.17.2