ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 16.4.1

Subclass Accession number: 5166
Subclass: 16.4.1

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 2.7 (>75 %)  2.7.3 (>75 %)  2.7.3.2 5.3 (>75 %)  5.3.1 (>75 %)  5.3.1.5
GO : GO:0000287 (>50 %)  GO:0003676 (>50 %)  GO:0003677 (>50 %)  GO:0004111 (>75 %)  GO:0004518 (>50 %)  GO:0004519 (>50 %)  GO:0009045 (>50 %)  GO:0016301 (>75 %)  GO:0016772 (>75 %)  GO:0016775 (>75 %)  GO:0016788 (>50 %)  GO:0016853 (>50 %)  GO:0016860 (>50 %)  GO:0016861 (>50 %)
SCOP : 48033 (>75 %)  48034 (>75 %)  48035 (>75 %)  51658 (>75 %)  51665 (>75 %)

Number of loops: 4

Average sequence ID (%) : 91.1 +/- -19.7
Average RMSD (Å) : 0.275 +/- 0.050

Consensus geometry

d (Å): 21

delta (°): 135-180

theta (°): 90-135

rho (°): 180-225

Consensus Sequence:	VDNPGHPhIMTVGCVAGDEE
(φψ)-conformation:	aabaebaabpbalbbbabaa

Pattern:	[LV]	[D]	[D]	[IV]	[I]	[Q]	[T]	[G]	[V]	[D]	[N]	[P]	[G]	[H]	[P]	[FY]	[I]	[M]	[T]	[V]	[G]	[C]	[V]	[A]	[G]	[D]	[E]	[E]	[CS]	[Y]	[DET]	[V]
Conservation:	-1.689	0.534	0.534	-1.054	-0.738	-0.102	-0.102	0.534	-0.738	0.534	0.534	1.169	0.534	1.805	1.169	-0.273	-0.738	-0.102	-0.102	-0.738	0.534	2.440	-0.738	-0.738	0.534	0.534	-0.102	-0.102	-1.619	1.169	-2.143	-0.738

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1g0w_A_53	1g0w	A	53	84	VDDVIQTGVDNPGHPYIMTVGCVAGDEESYDV	HHHHHHHHHH----SS--B-----SSTTHHHH	aaaaaaaaaabaebaabxbavbbxabaaaaaa
1n16_A_53	1n16	A	53	84	LDDIIQTGVDNPGHPFIMTVGCVAGDEECYEV	HHHHHHHHHH----SSS-B-----SSTTHHHH	aaaaaaaaaabaebaabbxavbbbabaaaaaa
1qh4_A_53	1qh4	A	53	84	LDDVIQTGVDNPGHPFIMTVGCVAGDEESYEV	HHHHHHHHHH----SSS-B-----SSTTHHHH	aaaaaaaaaabaebaaxxbavbbxabaaaaaa
2crk_A_53	2crk	A	53	84	LDDVIQTGVDNPGHPFIMTVGCVAGDEESYTV	HHHHHHHHHH---BTTB-B-----SSSTHHHH	aaaaaaaaaabaebaabxbavbbbabaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Clusters included in this Subclass