Information on SUBCLASS 16.8.1 |
Subclass Accession number: 5170
Subclass: 16.8.1 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0005489 (>75 %) SCOP : 46625 (>75 %) 46626 (>75 %) 46627 (>75 %) |
Number of loops: 3 Average sequence ID (%) : 41.0 +/- 12.9 Average RMSD (Å) : 0.867 +/- 0.208 Consensus geometry
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Consensus Sequence: | XXcDXcAKXcMXFKhXKXXX |
(φψ)-conformation: | aalbaapbbapabbpabgaa |
Pattern: | [P] | [GKT] | x | [FW] | [L] | [KV] | [EK] | [KMY] | [LT] | [DG] | [D] | [AK] | [GK] | [A] | [K] | [GT] | [GK] | [M] | [AT] | [F] | [K] | [LM] | [AGK] | [K] | [EGN] | [AGQ] | [ADE] | [AD] | [HV] | [ANV] | [AI] | [FWY] | [AL] | [AY] | x |
Conservation: | 2.404 | -1.139 | -0.891 | 0.931 | 0.725 | -0.643 | 0.230 | -0.953 | -0.361 | -0.026 | 1.844 | -0.406 | -0.481 | 0.725 | 1.285 | -0.499 | -0.468 | 1.285 | -0.100 | 1.844 | 1.285 | 0.279 | -0.953 | 1.285 | -0.704 | -0.953 | -0.704 | -0.468 | -0.797 | -1.263 | -0.611 | 0.725 | -0.611 | -0.617 | -1.201 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1c2r_A_79 | 1c2r | A | 79 | 113 | PGAFLKEKLDDKKAKTGMAFKLAKGGEDVAAYLAS | HHHHHHHHHT-TT---S-----SS-HHHHHHHHHH | aaaaaaaaalbaaxbbaxabbxabgaaaaaaaaaa |
1cot_*_83 | 1cot | - | 83 | 117 | PKPWLVKMTDDKGAKTKMTFKMGKNQADVVAFLAQ | HHHHHHHHHT-TT---S------S-HHHHHHHHHH | aaaaaaaaavbaapxbabaxbbabvaaaaaaaaaa |
1cxc_*_83 | 1cxc | - | 83 | 117 | PTKFLKEYTGDAKAKGKMTFKLKKEADAHNIWAYL | HHHHHHHHHS-TT---S-------HHHHHHHHHHH | aaaaaaaaavbaapbxaxabbxabaaaaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Clusters included in this Subclass |
CLUSTER: HH.15.17 |