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Information on SUBCLASS 0.1.8
Subclass Accession number: 5195
Subclass: 0.1.8 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 20

Average sequence ID (%) : 8.2 +/- 13.0
Average RMSD (Å) : 0.560 +/- 0.167

Consensus geometry
d (Å): 7 delta (°): 0-45 theta (°): 45-90 rho (°): 135-180
Consensus Sequence: XXhX
(φψ)-conformation: aabb
Pattern: [adeknq]xxx[aekqrt]x[filvwy]x
Conservation:1.049-0.590-0.986-0.5661.265-0.2701.184-1.088
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1brw_A_4051brw   A409416EKIEAAIRHHHHTTEEaaaaaaxb
1dpg_A_691dpg   A7380EAFIEHFSHHHHTTEEaaaaaabb
1dsx_A_621dsx   A6370KKRMRYFDHHHHTTEEaaaaaaxb
1eo9_B_4981eo9   B499506QQRRALIAHHHHTTEEaaaaaabx
1h7s_A_2331h7s   A233240QKQLQSLIHHHHHTEEaaaaaabb
1l5w_A_3291l5w   A334341AITSKTFAHHHTTTEEaaaaaaxb
1lj0_A_651lj0   A6976EMSKQYYIHHHHTTEEaaaaaaxa
1lml_*_1601lml   -166173QLHTERLKHHHHTTEEaaaaaabb
1m1n_A_221m1n   A2633KDRNKHLAHHHHTTEEaaaaaabb
1mdo_A_3491mdo   A352359EWNSERICHHHHTTEEaaaaaaxb
1mj4_A_681mj4   A7279ELLAQYKIHHHHTTEEaaaaaaxa
1nw1_A_3101nw1   A317324HFIEWTIDHHHHTTEEaaaaaabb
1oh4_A_161oh4   A1623PEEVKNWWHHHHTTEEaaaaaabb
1sbp_*_1521sbp   -160167KALFKNVEHHHHHTEEaaaaaaxa
1sox_A_681sox   A7279ELLQQYKVHHHHTTEEaaaaaaxa
1urs_A_1211urs   A122129NTIDAIKVHHHHTTEEaaaaaaxb
1ycq_A_921ycq   A97104AMISRNLVHHHHTTEEaaaaaaba
1ygs_*_4931ygs   -494501DLRRLCILHHHHTTEEaaaaaabb
2pva_A_1162pva   A120127IEKLTSYTHHHHTTEEaaaaaabb
3mbp_*_913mbp   -9299FTWDAVRYHHHHTTEEaaaaaaxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1h7s_A_2331h7s   A     MSESELENOMETHIONINE I - 240
1h7s_A_2331h7s   A     MSESELENOMETHIONINE P - 241
1lj0_A_651lj0   A     MGMAGNESIUM ION P - 65
1lj0_A_651lj0   A     HEMPROTOPORPHYRIN IX CONTAINING FE P - 65
1lj0_A_651lj0   A     MGMAGNESIUM ION D - 66
1lj0_A_651lj0   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 66
1lj0_A_651lj0   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 67
1lj0_A_651lj0   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 68
1lj0_A_651lj0   A     MGMAGNESIUM ION E - 69
1lj0_A_651lj0   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 70
1lj0_A_651lj0   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 71
1lj0_A_651lj0   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 74
1mdo_A_3491mdo   A     MSESELENOMETHIONINE T - 351
1mdo_A_3491mdo   A     MSESELENOMETHIONINE E - 352
1mdo_A_3491mdo   A     MSESELENOMETHIONINE N - 354
1mdo_A_3491mdo   A     MSESELENOMETHIONINE S - 355
1mdo_A_3491mdo   A     MSESELENOMETHIONINE I - 358
1mdo_A_3491mdo   A     MSESELENOMETHIONINE C - 359
1mdo_A_3491mdo   A     MSESELENOMETHIONINE L - 361
1mj4_A_681mj4   A     SULSULFATE ANION S - 68
1mj4_A_681mj4   A     SULSULFATE ANION H - 69
1mj4_A_681mj4   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 69
1mj4_A_681mj4   A     GOLGLYCEROL H - 69
1mj4_A_681mj4   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 70
1mj4_A_681mj4   A     GOLGLYCEROL V - 70
1mj4_A_681mj4   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 73
1mj4_A_681mj4   A     GOLGLYCEROL L - 73
1mj4_A_681mj4   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 74
1nw1_A_3101nw1   A     CACALCIUM ION I - 319
1nw1_A_3101nw1   A     CACALCIUM ION E - 320
1nw1_A_3101nw1   A     CACALCIUM ION W - 321
1nw1_A_3101nw1   A     CACALCIUM ION T - 322
1nw1_A_3101nw1   A     CACALCIUM ION I - 323
1nw1_A_3101nw1   A     CACALCIUM ION D - 324
1oh4_A_161oh4   A     GOLGLYCEROL P - 16
1oh4_A_161oh4   A     GOLGLYCEROL E - 18
1oh4_A_161oh4   A     GOLGLYCEROL V - 19
1oh4_A_161oh4   A     GOLGLYCEROL K - 20
1oh4_A_161oh4   A     GOLGLYCEROL N - 21
1oh4_A_161oh4   A     GOLGLYCEROL W - 22
1oh4_A_161oh4   A     GOLGLYCEROL W - 23
1oh4_A_161oh4   A     GOLGLYCEROL N - 24
1oh4_A_161oh4   A     BMABETA-D-MANNOSE S - 25
1oh4_A_161oh4   A     BMABETA-D-MANNOSE G - 26
1oh4_A_161oh4   A     BMABETA-D-MANNOSE T - 27
1oh4_A_161oh4   A     BMABETA-D-MANNOSE W - 28
1oh4_A_161oh4   A     GLAALPHA D-GALACTOSE W - 28
1sox_A_681sox   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 77
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1oh4_A_161oh4   A AC9GOL BINDING SITE FOR CHAIN AE - 18
1oh4_A_161oh4   A AC8GOL BINDING SITE FOR CHAIN AW - 22
1oh4_A_161oh4   A AC6GLA BINDING SITE FOR CHAIN AW - 28

Clusters included in this Subclass
CLUSTER: HE.1.17
CLUSTER: HE.3.39