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Information on SUBCLASS 0.1.17
Subclass Accession number: 5204
Subclass: 0.1.17 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 12

Average sequence ID (%) : 9.5 +/- 13.5
Average RMSD (Å) : 0.517 +/- 0.204

Consensus geometry
d (Å): 5 delta (°): 45-90 theta (°): 45-90 rho (°): 90-135
Consensus Sequence: ppXX
(φψ)-conformation: aabb
Pattern: [filvy]x[DEKNQRT][ekny][filtvy][degknqst]x
Conservation:0.171-0.8401.5510.4890.676-0.837-1.210
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1edq_A_501edq   A5056YNNLVKVHHHHEEEaaaabbx
1g3m_A_41g3m   A713YYEKFEEHHHHEEEaaaabbx
1h5z_A_3971h5z   A411417LLREYEFHHHHEEEaaaabbb
1jbk_A_1591jbk   A161167LKKYTIDHHHHEEEaaaabbx
1jys_A_101jys   A1622LRDKIENHHHH-EEaaaaxxl
1kyf_A_7601kyf   A762768LQTNLNLHHHHEEEaaaabbb
1l2t_A_741l2t   A8187RRDKIGFHHHHEEEaaaabbb
1mg7_A_2071mg7   A209215FNKKHDLHHHHEEEaaaabbx
1mnn_A_2101mnn   A217223DSTFYLHHHHHEEEaaaabbx
1po5_A_4391po5   A453459ILQNFSIHHHHEEEaaaabxb
1rkq_A_1731rkq   A175181VKEKYTVHHHHEEEaaaabxb
2dpm_A_1562dpm   A165171YINNNQLHHHHSEEaaaabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1g3m_A_41g3m   A     EDO1,2-ETHANEDIOL Y - 7
1g3m_A_41g3m   A     EDO1,2-ETHANEDIOL Y - 8
1g3m_A_41g3m   A     EDO1,2-ETHANEDIOL F - 11
1g3m_A_41g3m   A     EDO1,2-ETHANEDIOL E - 12
1g3m_A_41g3m   A     EDO1,2-ETHANEDIOL E - 13
1h5z_A_3971h5z   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 397
1h5z_A_3971h5z   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 399
1h5z_A_3971h5z   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 400
1h5z_A_3971h5z   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 401
1h5z_A_3971h5z   A     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 403
1h5z_A_3971h5z   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 404
1po5_A_4391po5   A     HEMPROTOPORPHYRIN IX CONTAINING FE E - 439
1po5_A_4391po5   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 441
1po5_A_4391po5   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 442
1po5_A_4391po5   A     HEMPROTOPORPHYRIN IX CONTAINING FE E - 445
1po5_A_4391po5   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 446
1rkq_A_1731rkq   A     MO3MAGNESIUM ION, 3 WATERS COORDINATED K - 183
1rkq_A_1731rkq   A     MO3MAGNESIUM ION, 3 WATERS COORDINATED S - 184
1rkq_A_1731rkq   A     MO3MAGNESIUM ION, 3 WATERS COORDINATED A - 185

Clusters included in this Subclass
CLUSTER: HE.0.8