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Information on SUBCLASS 0.1.29
Subclass Accession number: 5216
Subclass: 0.1.29 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 6

Average sequence ID (%) : 13.8 +/- 12.7
Average RMSD (Å) : 0.567 +/- 0.151

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: ppXp
(φψ)-conformation: aabp
Pattern: xx[lvwy][AEFL][afkv][ertw][L][agqs][EHKNP][DEKY]x[KNPR]xx
Conservation:-0.864-0.653-0.182-0.298-0.415-0.4953.104-0.2020.4230.236-0.2500.706-0.240-0.871
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1i6l_A_231i6l   A2336LRQFVELQHEYNCYHHHHHHHTTTSEEEaaaaaaaaaabxbb
1ju2_A_381ju2   A3952CPLAATLSEKYKVLHHHHHHHTTTS-EEaaaaaaaaaabxbb
1nvt_A_1381nvt   A141154RAVAFELAKDNNIIHHHHHHHTSSSEEEaaaaaaaaaabxbb
1obd_A_531obd   A6274EFWFKFLSNDVRN.HHHHHHTTTT-EE.aaaaaaaaaabxb.
1oj4_A_2201oj4   A223236DAVLSWLLEYAPSRHHHHHHHTTTS-EEaaaaaaaaaabwbb
1vh0_A_141vh0   A2134AEYEKRLGPYTKIDHHHHHHHGGGSEEEaaaaaaaaaabxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1i6l_A_231i6l   A     TYMTRYPTOPHANYL-5'AMP F - 26
1i6l_A_231i6l   A     GOLGLYCEROL Q - 30
1i6l_A_231i6l   A     MSESELENOMETHIONINE H - 31
1i6l_A_231i6l   A     MSESELENOMETHIONINE E - 32
1i6l_A_231i6l   A     MSESELENOMETHIONINE Y - 33
1i6l_A_231i6l   A     GOLGLYCEROL Y - 33
1i6l_A_231i6l   A     MSESELENOMETHIONINE N - 34
1i6l_A_231i6l   A     GOLGLYCEROL N - 34
1i6l_A_231i6l   A     GOLGLYCEROL C - 35
1i6l_A_231i6l   A     GOLGLYCEROL Y - 36
1ju2_A_381ju2   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 38
1ju2_A_381ju2   A     FADFLAVIN-ADENINE DINUCLEOTIDE L - 54
1nvt_A_1381nvt   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE G - 138
1nvt_A_1381nvt   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE A - 139
1nvt_A_1381nvt   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE A - 140
1nvt_A_1381nvt   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE A - 156
1obd_A_531obd   A     MGMAGNESIUM ION L - 57
1obd_A_531obd   A     MGMAGNESIUM ION T - 58
1obd_A_531obd   A     AMPADENOSINE MONOPHOSPHATE K - 59
1obd_A_531obd   A     MGMAGNESIUM ION S - 61
1obd_A_531obd   A     AMPADENOSINE MONOPHOSPHATE E - 62
1obd_A_531obd   A     MGMAGNESIUM ION F - 65
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1obd_A_531obd   A AC6MG BINDING SITE FOR CHAIN AS - 61
1obd_A_531obd   A AC7AMP BINDING SITE FOR CHAIN AE - 62
1obd_A_531obd   A AC4SO4 BINDING SITE FOR CHAIN AR - 73
1obd_A_531obd   A AC4SO4 BINDING SITE FOR CHAIN AN - 74

Clusters included in this Subclass
CLUSTER: HE.4.84
CLUSTER: HE.5.150