ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.3.7

Subclass Accession number: 524
Subclass: 2.3.7

PSSM

Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 10

Average sequence ID (%) : 12.6 +/- 14.1
Average RMSD (Å) : 0.640 +/- 0.178

Consensus geometry

d (Å): 7

delta (°): 90-135

theta (°): 135-180

rho (°): 270-315

Consensus Sequence:	hpcpXX
(φψ)-conformation:	bbeabb

Pattern:	x	[lvwy]	x	[DEKQRS]	[DGQ]	[DEKNPT]	x	x	[ILTV]	[agim]	x	x	x
Conservation:	-0.553	-0.297	-0.883	1.241	1.603	0.547	-0.671	0.076	1.802	-0.501	-0.172	-1.218	-0.973

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ccz_A_26	1ccz	A	27	39	LWKKQKDKVAELE	EEEETTEEEEEEE	bbbbeabxabbbb
1d2e_A_421	1d2e	A	423	435	TLRDGNRTIGTGL	EEEETTEEEEEEE	bbbbeabxabbbb
1es6_A_71	1es6	A	80	92	NVISGPKVLMKQI	EEEETTEEEEEEE	bxbbeaxxabblb
1ghe_A_62	1ghe	A	66	78	VVAEDDNVLASAQ	EEEETTEEEEEEE	bbbbeaxxabbbb
1jz7_A_254	1jz7	A	259	271	SLWQGETQVASGT	EEEETTEEEEEEE	bbbbeabxabbbb
1ljo_A_42	1ljo	A	48	60	MECKGEEKVRSLG	EEEETTEEEEEEE	bxbbeaxxabxae
1m6i_A_562	1m6i	A	566	578	FYLRDKVVVGIVL	EEEETTEEEEEEE	xbbbeabxabbbb
1mbm_A_123	1mbm	A	123	135	AVVQGDAVVGVHT	EEEETTEEEEEEE	xbbbeabxaebxa
1n7v_A_376	1n7v	A	381	393	VQLQDNSVLDVLY	EEEETTEEEEEEE	bbbbeabxabbbx
1oey_J_238	1oey	J	243	255	YYYEDTISTIKDI	EEEETTEEEEEEE	bbxbeabbbbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ghe_A_62	1ghe	A	MSESELENOMETHIONINE	L - 74
1ghe_A_62	1ghe	A	MSESELENOMETHIONINE	A - 75
1ghe_A_62	1ghe	A	MSESELENOMETHIONINE	S - 76
1ghe_A_62	1ghe	A	MSESELENOMETHIONINE	A - 77
1ghe_A_62	1ghe	A	MSESELENOMETHIONINE	Q - 78
1jz7_A_254	1jz7	A	MGMAGNESIUM ION	T - 257
1jz7_A_254	1jz7	A	DMSDIMETHYL SULFOXIDE	T - 257
1jz7_A_254	1jz7	A	MGMAGNESIUM ION	Q - 266
1jz7_A_254	1jz7	A	DMSDIMETHYL SULFOXIDE	S - 269
1jz7_A_254	1jz7	A	DMSDIMETHYL SULFOXIDE	G - 270
1jz7_A_254	1jz7	A	DMSDIMETHYL SULFOXIDE	T - 271
1jz7_A_254	1jz7	A	DMSDIMETHYL SULFOXIDE	A - 272
1jz7_A_254	1jz7	A	DMSDIMETHYL SULFOXIDE	P - 273
1oey_J_238	1oey	J	MSESELENOMETHIONINE	N - 238

Clusters included in this Subclass

CLUSTER: HA.1.22