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Information on SUBCLASS 2.3.9
Subclass Accession number: 526
Subclass: 2.3.9 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 6.1 (>75 %)  6.1.1 (>75 %)  
GO : GO:0003676 (>75 %)  GO:0004812 (>75 %)  GO:0008452 (>75 %)  GO:0016874 (>75 %)  GO:0016875 (>75 %)  GO:0016876 (>75 %)  GO:0016886 (>75 %)  
 Number of loops: 7

Average sequence ID (%) : 10.3 +/- 12.4
Average RMSD (Å) : 0.471 +/- 0.243

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 90-135 rho (°): 270-315
Consensus Sequence: XXXcph
(φψ)-conformation: bbeabp
Pattern: [AFILV][fmqy]x[EGN][DEGKN][DEHKQ][LPV][AILMTV][afglmy]x[FGLT]x[fgipwy]
Conservation:0.8590.373-0.7771.4530.7321.2630.5990.562-0.909-0.769-0.718-1.103-1.566
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a3k_*_1451a3k   -149161FQRGNDVAFHFNPEEETTEEEEEEEExbbeaxbabbbbw
1ixl_A_1001ixl   A107119VYREEEVVLEGKFEEETTEEEEEEEEbbbeaxxabbbbb
1lqv_A_241lqv   A3143ASLGGHLTHVLEGEEETTEEEEEEEEbbbeabxabbbbe
1n67_A_2971n67   A297309IMAGDQVLANGVIEEETTEEEEEEEExbbeabxabbbbx
1o91_A_6581o91   A677689LFKNNEPMMYTYDEEETTEEEEEEEExbbeabxabbbbb
1q2y_A_431q2y   A4759VYDGEKPVGAGRWEEETTEEEEEEEEbbbeaxwabbbbb
1vdw_A_1001vdw   A105117IFHEKDPIYAFIYEEETTEEEEEEEEbbxeabwabbbbe
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a3k_*_1451a3k   *     GALD-GALACTOSE H - 158
1a3k_*_1451a3k   *     GALD-GALACTOSE N - 160
1a3k_*_1451a3k   *     GALD-GALACTOSE R - 162
1a3k_*_1451a3k   *     NAGN-ACETYL-D-GLUCOSAMINE R - 162
1ixl_A_1001ixl   A     MSESELENOMETHIONINE C - 121
1lqv_A_241lqv   A     NAGN-ACETYL-D-GLUCOSAMINE Q - 28
1lqv_A_241lqv   A     NAGN-ACETYL-D-GLUCOSAMINE G - 29
1lqv_A_241lqv   A     PTYPHOSPHATIDYLETHANOLAMINE G - 29
1lqv_A_241lqv   A     NAGN-ACETYL-D-GLUCOSAMINE N - 30
1lqv_A_241lqv   A     PTYPHOSPHATIDYLETHANOLAMINE N - 30
1lqv_A_241lqv   A     PTYPHOSPHATIDYLETHANOLAMINE A - 31
1lqv_A_241lqv   A     NAGN-ACETYL-D-GLUCOSAMINE L - 37
1lqv_A_241lqv   A     PTYPHOSPHATIDYLETHANOLAMINE H - 39
1lqv_A_241lqv   A     NAGN-ACETYL-D-GLUCOSAMINE V - 40
1lqv_A_241lqv   A     PTYPHOSPHATIDYLETHANOLAMINE V - 40
1lqv_A_241lqv   A     PTYPHOSPHATIDYLETHANOLAMINE L - 41
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1o91_A_6581o91   A SO4SO4 BINDING SITE FOR CHAIN CY - 661
1o91_A_6581o91   A SO4SO4 BINDING SITE FOR CHAIN CA - 663

Clusters included in this Subclass
CLUSTER: HA.3.51