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Information on SUBCLASS 1.1.2
Subclass Accession number: 5268
Subclass: 1.1.2 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 58

Average sequence ID (%) : 14.2 +/- 15.6
Average RMSD (Å) : 0.481 +/- 0.150

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: pXchX
(φψ)-conformation: aagbb
Pattern: [adeknqrst]x[acfgilmvwy]x[adeknqrst]x[DEGKNRS][acfgiklmtv]xx
Conservation:-0.014-0.432-0.146-0.2720.254-0.9412.650-0.208-0.834-0.057
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ako_*_1811ako   -188197DRLMSWGLVDHHHHHTTEEEaaaaaagbbx
1b74_A_1221b74   A125134RKLEEGGADVHHHHTTS-EEaaaaaavbxx
1bud_A_261bud   A4251ESYSYLKIDIHHHHTTTEEEaaaaaavbxx
1byf_A_141byf   A1928TYCQSRGMALHHHHTTT-EEaaaaaavbbp
1c7n_A_1251c7n   A128137MAIKNQERKIHHHHTTT-EEaaaaaalxbx
1ce2_A_3961ce2   A400409YTAGKCGLVPHHHHTTTEEEaaaaaavxbx
1cjw_A_1651cjw   A166175PFYQRFGFHPHHHHTTTEEEaaaaaavxbw
1csn_*_1051csn   -120128QSIHEKSLV.HHHHTTTEE.aaaaaavbb.
1db3_A_2581db3   A264273MAAAQLGIKLHHHHTTTEEEaaaaaavbxb
1dcl_A_1261dcl   A126135SEELQANKATHHHHTTT-EEaaaaaavxbb
1dpe_*_3611dpe   -370379ADWAKVGVQAHHHHTTTEEEaaaaaavbxx
1ecs_A_141ecs   A1928AFYERLGFGIHHHHTTT-EEaaaaaavxbx
1g41_A_3521g41   A358367ALMATEGVNIHHHHTTT-EEaaaaaavbbb
1gv4_A_3451gv4   A353362EKVKREGVKVHHHHTTT-EEaaaaaavbxx
1h70_A_2191h70   A223232EKIARLGYRVHHHHTTT-EEaaaaaagxxx
1h7w_A_2381h7w   A246255ELMKDLGVKIHHHHTTT-EEaaaaaavxbb
1hc7_A_3521hc7   A352361PKDLEGGQAVHHHHHTTEEEaaaaaavbbx
1i9s_A_771i9s   A7786NDIEKEGIKYHHHHTTT-EEaaaaaavxxb
1ih7_A_3611ih7   A371379NSLKEQNKV.HHHHTTTEE.aaaaaalxb.
1iug_A_2951iug   A300308EAFAQRGAV.HHHHTTTEE.aaaaaavbb.
1iwp_B_511iwp   B6069AGVEEEGLHAHHHHTTT-EEaaaaaavbxx
1ixh_*_1961ixh   -197206AYAKQNNLAYHHHHTTT-EEaaaaaalxxb
1j3v_A_941j3v   A102111ERLREKGVTYHHHHTTTEEEaaaaaavbxx
1je0_A_1671je0   A169178KKWSSRGNIAHHHHTTTEEEaaaaaavbab
1jgt_A_3861jgt   A386395VLSTLAGHWTHHHHTTT-EEaaaaaavxxb
1jkm_A_1371jkm   A144153TDLAAAGSVVHHHHHTT-EEaaaaaagbxb
1jr2_A_181jr2   A2130RELGLYGLEAHHHHTTT-EEaaaaaavxxb
1kaf_A_1691kaf   A173182QKFTDIGMSCHHHHTTT-EEaaaaaagxxb
1kcv_L_1221kcv   L122131SEQLSSGGASHHHHTTTEEEaaaaaavbbb
1kut_A_1461kut   A157166EFFERANFELHHHHTTTEEEaaaaaavbbx
1l1e_A_2081l1e   A213222EYAEKVGFRVHHHHTTT-EEaaaaaagxbx
1l6r_A_1211l6r   A126135KEAESRGFVIHHHHTTTEEEaaaaaavbbb
1lc5_A_3111lc5   A313321RRLLTQRIL.HHHHTTTEE.aaaaaavbb.
1lg7_A_2011lg7   A203212EKALMFGLIVHHHHTTTEEEaaaaaavbbb
1lvg_A_851lvg   A8998RAVQAMNRICHHHHHTT-EEaaaaaalbxx
1mju_L_1221mju   L122131SEQLTSGGASHHHHTTTEEEaaaaaavbbb
1mlw_A_2381mlw   A242251LSGLAFRVFHHHHHTTTEEEaaaaaalbbx
1n0x_L_1221n0x   L122131DEQLKSGTASHHHHTTTEEEaaaaaagbbb
1nb2_A_191nb2   A2433KRFESKGLKLHHHHTTT-EEaaaaaagpbx
1nhp_*_1911nhp   -199208EEMEANNITIHHHHTTTEEEaaaaaalbxb
1odk_A_1641odk   A168177RAWARYGVLAHHHHTTTEEEaaaaaagxab
1ohe_A_2711ohe   A271280KRFTDAGFDHHHHHTTT-EEaaaaaavxxx
1pkx_A_5461pkx   A549558DRAKRSGVAYHHHHTTTEEEaaaaaavxab
1prx_A_491prx   A5968PEFAKRNVKLHHHHTTTEEEaaaaaavbxb
1q0r_A_411q0r   A4554RRLADGGLHVHHHHTTT-EEaaaaaagbxx
1q41_A_1551q41   A170178AYIHSFGIC.HHHHTTTEE.aaaaaavxb.
1qmv_A_621qmv   A6372EDFRKLGCEVHHHHTTTEEEaaaaaavbxb
1qz9_A_3521qz9   A357365QALIDRGVI.HHHHTTTEE.aaaaaavxb.
1ri5_A_2301ri5   A235244DGFKRLGLSLHHHHTTTEEEaaaaaavbbx
1riq_A_3941riq   A399408EIAREKGLGIHHHHTTT-EEaaaaaavxbb
1rkd_*_701rkd   -7583QQLATDNID.HHHHTTTEE.aaaaaavbx.
1s96_A_861s96   A9099EQVLATGVDVHHHHTTT-EEaaaaaavxxb
1s9r_A_511s9r   A6372AELKANDINVHHHHTTT-EEaaaaaalbxx
1scj_B_3231scj   B328337DVISQKGGKVHHHHTTT-EEaaaaaagpbx
1vgy_A_321vgy   A3241ERLHKIGFAAHHHHTTT-EEaaaaaavxxb
1vi2_A_2401vi2   A243252QQAQQAGCKTHHHHTTT-EEaaaaaNvxxb
2rsl_A_722rsl   A8190KEFDAQGVSIHHHHTT-EEEaaaaaavbbb
6mht_A_236mht   A2635LALESCGAECHHHHTTT-EEaaaaaavxbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1c7n_A_1251c7n   A     PLPPYRIDOXAL-5'-PHOSPHATE F - 126
1ce2_A_3961ce2   A     FEFE (III) ION G - 396
1ce2_A_3961ce2   A     CO3CARBONATE ION G - 396
1cjw_A_1651cjw   A     COTCOA-S-ACETYL TRYPTAMINE F - 167
1cjw_A_1651cjw   A     COTCOA-S-ACETYL TRYPTAMINE Y - 168
1cjw_A_1651cjw   A     COTCOA-S-ACETYL TRYPTAMINE R - 170
1cjw_A_1651cjw   A     COTCOA-S-ACETYL TRYPTAMINE F - 171
1ecs_A_141ecs   A     CACALCIUM ION A - 19
1ecs_A_141ecs   A     CACALCIUM ION E - 22
1ecs_A_141ecs   A     PG4TETRAETHYLENE GLYCOL V - 29
1ecs_A_141ecs   A     PG4TETRAETHYLENE GLYCOL F - 30
1i9s_A_771i9s   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED D - 78
1i9s_A_771i9s   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED K - 81
1ih7_A_3611ih7   A     GMPGUANOSINE F - 370
1ih7_A_3611ih7   A     GMPGUANOSINE L - 373
1ih7_A_3611ih7   A     GMPGUANOSINE K - 374
1ih7_A_3611ih7   A     GMPGUANOSINE E - 375
1ih7_A_3611ih7   A     GMPGUANOSINE Q - 376
1ih7_A_3611ih7   A     GMPGUANOSINE N - 377
1ih7_A_3611ih7   A     GMPGUANOSINE K - 378
1ih7_A_3611ih7   A     GMPGUANOSINE V - 379
1j3v_A_941j3v   A     MSESELENOMETHIONINE D - 113
1je0_A_1671je0   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL V - 179
1je0_A_1671je0   A     PO4PHOSPHATE ION E - 180
1je0_A_1671je0   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL E - 180
1kut_A_1461kut   A     MSESELENOMETHIONINE E - 146
1kut_A_1461kut   A     MSESELENOMETHIONINE A - 147
1kut_A_1461kut   A     MSESELENOMETHIONINE A - 148
1kut_A_1461kut   A     MSESELENOMETHIONINE V - 149
1l6r_A_1211l6r   A     FMTFORMIC ACID V - 121
1l6r_A_1211l6r   A     CACALCIUM ION S - 138
1lvg_A_851lvg   A     ADPADENOSINE-5'-DIPHOSPHATE D - 101
1lvg_A_851lvg   A     5GPGUANOSINE-5'-MONOPHOSPHATE D - 101
1mlw_A_2381mlw   A     HBL7,8-DIHYDRO-L-BIOPTERIN P - 238
1mlw_A_2381mlw   A     HBL7,8-DIHYDRO-L-BIOPTERIN R - 239
1mlw_A_2381mlw   A     HBL7,8-DIHYDRO-L-BIOPTERIN F - 241
1mlw_A_2381mlw   A     HBL7,8-DIHYDRO-L-BIOPTERIN L - 242
1mlw_A_2381mlw   A     FEFE (III) ION F - 250
1mlw_A_2381mlw   A     HBL7,8-DIHYDRO-L-BIOPTERIN F - 250
1mlw_A_2381mlw   A     HBL7,8-DIHYDRO-L-BIOPTERIN H - 251
1mlw_A_2381mlw   A     HBL7,8-DIHYDRO-L-BIOPTERIN C - 252
1n0x_L_1221n0x   L     GOLGLYCEROL D - 122
1n0x_L_1221n0x   L     GOLGLYCEROL E - 123
1n0x_L_1221n0x   L     GOLGLYCEROL Q - 124
1odk_A_1641odk   A     GOLGLYCEROL E - 165
1odk_A_1641odk   A     GOLGLYCEROL E - 166
1odk_A_1641odk   A     GOLGLYCEROL A - 167
1odk_A_1641odk   A     GOLGLYCEROL A - 169
1odk_A_1641odk   A     GOLGLYCEROL W - 170
1odk_A_1641odk   A     GOLGLYCEROL Y - 173
1prx_A_491prx   A     CSOS-HYDROXYCYSTEINE T - 49
1prx_A_491prx   A     CSOS-HYDROXYCYSTEINE E - 50
1prx_A_491prx   A     CSOS-HYDROXYCYSTEINE L - 51
1prx_A_491prx   A     CSOS-HYDROXYCYSTEINE G - 52
1riq_A_3941riq   A     MSESELENOMETHIONINE I - 400
1s96_A_861s96   A     MSESELENOMETHIONINE R - 86
1s96_A_861s96   A     MSESELENOMETHIONINE I - 89
1s96_A_861s96   A     MSESELENOMETHIONINE E - 90
1s96_A_861s96   A     MSESELENOMETHIONINE L - 93
1s96_A_861s96   A     UNXUNKNOWN ATOM OR ION D - 102
1s9r_A_511s9r   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL S - 51
1s9r_A_511s9r   A     UNXUNKNOWN ATOM OR ION D - 53
1s9r_A_511s9r   A     UNXUNKNOWN ATOM OR ION E - 57
1vgy_A_321vgy   A     MSESELENOMETHIONINE E - 32
1vgy_A_321vgy   A     MSESELENOMETHIONINE R - 33
1vgy_A_321vgy   A     MSESELENOMETHIONINE L - 34
1vgy_A_321vgy   A     MSESELENOMETHIONINE H - 35
1vgy_A_321vgy   A     MSESELENOMETHIONINE E - 42
1vi2_A_2401vi2   A     MSESELENOMETHIONINE K - 240
1vi2_A_2401vi2   A     MSESELENOMETHIONINE L - 242
1vi2_A_2401vi2   A     MSESELENOMETHIONINE Q - 243
1vi2_A_2401vi2   A     MSESELENOMETHIONINE Q - 246
1vi2_A_2401vi2   A     MSESELENOMETHIONINE I - 253
6mht_A_236mht   A     SAMS-ADENOSYLMETHIONINE G - 23
6mht_A_236mht   A     SAMS-ADENOSYLMETHIONINE F - 24
6mht_A_236mht   A     SAMS-ADENOSYLMETHIONINE N - 39
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1odk_A_1641odk   A AC1GOL BINDING SITE FOR CHAIN AA - 169
1odk_A_1641odk   A AC1GOL BINDING SITE FOR CHAIN AW - 170
1odk_A_1641odk   A AC1GOL BINDING SITE FOR CHAIN AY - 173

Clusters included in this Subclass
CLUSTER: HE.2.47
CLUSTER: HE.2.88
CLUSTER: HE.3.189
CLUSTER: HE.3.31
CLUSTER: HE.3.50
CLUSTER: HE.4.15
CLUSTER: HE.4.178
CLUSTER: HE.4.85
CLUSTER: HE.5.330
CLUSTER: HE.5.52