Logo
Information on SUBCLASS 2.3.12
Subclass Accession number: 529
Subclass: 2.3.12 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
SCOP : 54451 (>75 %)  54452 (>75 %)  54453 (>75 %)  
Number of loops: 7

Average sequence ID (%) : 7.0 +/- 8.2
Average RMSD (Å) : 0.643 +/- 0.098

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: XphpXX
(φψ)-conformation: bbeabb
Pattern: [ACGITV]xxx[cdsty]xxx[desty][gwy][EHNPQT]x[ltv][hilvy]x
Conservation:0.372-0.880-0.880-0.744-0.2480.419-1.306-1.027-0.2802.2131.321-0.4311.3260.280-0.136
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1c3m_A_791c3m   A8195AISGTFGAYYHMTVVEEEEEEEEETTEEEEbbbebbbxbeabxbx
1f2q_A_1471f2q   A147161GTYYCTGKVWQLDYEEEEEEEEEETTEEEEebbbbbbxbeabbbb
1giq_A_3871giq   A391405INKVDSYKDGTVTKLEEEEEEEEETTEEEExabbbbbbbeabxbb
1i58_A_4301i58   A431445TLILSARHEGNNVVIEEEEEEEEETTEEEEbbbbbbbxbeabbbb
1jss_A_1301jss   A133147VDFSYTVGYEEGLLSEEEEEEEEETTEEEEbbxbbbbxbeabbbb
1nqe_A_4521nqe   A464478VEATANFDTGPLTHTEEEEEEEEETTEEEEbbbbbbbbbeaxbbb
2sli_*_4672sli   -468482CKQYDYNFSGNNLIEEEEEEEEEETTEEEEbxxxbbbxbeaxxxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1c3m_A_791c3m   A     MANALPHA-D-MANNOSE M - 92
1c3m_A_791c3m   A     MANALPHA-D-MANNOSE V - 94
1f2q_A_1471f2q   A     NAGN-ACETYL-D-GLUCOSAMINE T - 148
1i58_A_4301i58   A     ACPPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER D - 449
1nqe_A_4521nqe   A     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE I - 461
1nqe_A_4521nqe   A     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE K - 462
1nqe_A_4521nqe   A     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE G - 463
1nqe_A_4521nqe   A     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE V - 464
1nqe_A_4521nqe   A     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE A - 466
1nqe_A_4521nqe   A     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE T - 467
1nqe_A_4521nqe   A     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE A - 468
1nqe_A_4521nqe   A     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE V - 479
1nqe_A_4521nqe   A     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE S - 480
1nqe_A_4521nqe   A     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE Y - 481
1nqe_A_4521nqe   A     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE Y - 483

Clusters included in this Subclass
CLUSTER: HA.1.31
CLUSTER: HA.2.81