ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 1.3.2

Subclass Accession number: 5296
Subclass: 1.3.2

PSSM

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 15

Average sequence ID (%) : 10.4 +/- 15.6
Average RMSD (Å) : 0.633 +/- 0.098

Consensus geometry

d (Å): 9

delta (°): 0-45

theta (°): 45-90

rho (°): 90-135

Consensus Sequence:	XphXX
(φψ)-conformation:	aapbb

Pattern:	[ADEKNQRST]	[dkqrsy]	[afilmvw]	x	[egnqs]	[afgklmv]	[dehpqrt]	x	x
Conservation:	1.343	-0.777	0.871	0.051	1.184	-1.149	0.435	-0.936	-1.022

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1byr_A_131	1byr	A	143	150	DRWNQGRD.	HHHHT-EE.	aaaaaxbp.
1e2h_A_306	1e2h	A	317	325	KRLRSMHVF	HHHHT-EEE	aaaaaxbxb
1eaf_*_416	1eaf	-	427	435	RSWLNVPHV	HHHHHS-EE	aaaaabxxb
1elj_A_320	1elj	A	327	334	QAVQHAYL.	HHHHT-EE.	aaaaaxxx.
1ezv_D_122	1ezv	D	127	135	NMAEEFEYD	HHHHTSEEE	aaaaabbbp
1fue_A_74	1fue	A	74	82	SDFANKTIG	HHHHTSEEE	aaaaabbbb
1fx4_A_1063	1fx4	A	1064	1072	EDRNQLDVT	HHHHTS-EE	aaaaabbbb
1ihu_A_265	1ihu	A	265	273	ADLAGLPTD	HHHHTS-EE	aaaaaxwbb
1j3b_A_80	1j3b	A	92	100	QYLSERDLY	HHHHTS-EE	aaaaabpbb
1l0l_B_407	1l0l	B	415	423	KKFVSGRKS	HHHHHS-EE	aaaaaxpbb
1m3y_A_213	1m3y	A	217	225	TRFAQLPHE	HHHHHS-EE	aaaaaxxbb
1nue_A_61	1nue	A	66	74	KYMNSGPVV	HHHHSS-EE	aaaaabxbb
1q44_A_14	1q44	A	22	30	ALISSLPKE	HHHHHS-EE	aaaaaxpbb
1rli_A_106	1rli	A	108	116	QQMSVKQAY	HHHHTSEEE	aaaaaxbbb
1ucn_A_61	1ucn	A	66	74	KYMHSGPVV	HHHHSS-EE	aaaaabxbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1fue_A_74	1fue	A	FMNFLAVIN MONONUCLEOTIDE	L - 86
1ihu_A_265	1ihu	A	ADPADENOSINE-5'-DIPHOSPHATE	L - 275
1ihu_A_265	1ihu	A	ADPADENOSINE-5'-DIPHOSPHATE	F - 276
1j3b_A_80	1j3b	A	GOLGLYCEROL	Y - 93
1j3b_A_80	1j3b	A	GOLGLYCEROL	R - 97
1nue_A_61	1nue	A	GDPGUANOSINE-5'-DIPHOSPHATE	L - 64
1nue_A_61	1nue	A	GDPGUANOSINE-5'-DIPHOSPHATE	Y - 67
1rli_A_106	1rli	A	PTPLATINUM (II) ION	V - 120
1ucn_A_61	1ucn	A	ADPADENOSINE-5'-DIPHOSPHATE	L - 64
1ucn_A_61	1ucn	A	ADPADENOSINE-5'-DIPHOSPHATE	Y - 67
1ucn_A_61	1ucn	A	PO4PHOSPHATE ION	M - 68

Clusters included in this Subclass

CLUSTER: HE.1.32

CLUSTER: HE.2.28

CLUSTER: HE.3.80