Information on SUBCLASS 2.2.2 |
Subclass Accession number: 5348
Subclass: 2.2.2 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 47 Average sequence ID (%) : 13.5 +/- 18.7 Average RMSD (Å) : 0.681 +/- 0.186 Consensus geometry
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Consensus Sequence: | XXXXXX |
(φψ)-conformation: | aapabb |
Pattern: | [agilvwy] | x | x | x | x | [adegnpqs] | x | x | [cfiltvw] | x |
Conservation: | -0.438 | -0.351 | 0.121 | 0.030 | 0.454 | 1.115 | -1.658 | -1.292 | 1.628 | 0.391 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a88_A_235 | 1a88 | A | 238 | 247 | SAELLANATL | HHHHSTTEEE | aaaaxabbbb |
1a9x_B_1749 | 1a9x | B | 1757 | 1766 | KFLETDIPVF | HHTTS---EE | aaaabaxwbb |
1aj2_*_71 | 1aj2 | - | 85 | 94 | IAQRFEVWIS | HHHH---EEE | aaaabaxxbb |
1bfd_*_500 | 1bfd | - | 509 | 518 | EALSAKGPVL | HHHH-SS-EE | aaaaxabxbb |
1bkj_A_69 | 1bkj | A | 69 | 78 | YVESAAEFLV | HHHHSSEEEE | aaaaxabbbb |
1bxk_A_12 | 1bxk | A | 21 | 30 | IINETSDAVV | HHHH-S-EEE | aaaabaxbbb |
1c7n_A_183 | 1c7n | A | 192 | 201 | IVLKSDLMLW | HHHHSS-EEE | aaaabaxxbb |
1cgl_A_127 | 1cgl | A | 141 | 150 | WSDVTPLTFT | HHTTSS-EEE | aaaabaxbbb |
1f0x_A_400 | 1f0x | A | 411 | 420 | YFKQAEGDFF | HHHHSS-EEE | aaaaxaxbbb |
1f5v_A_69 | 1f5v | A | 69 | 78 | HVAQAAEFWV | HHHHSSEEEE | aaaapabbbb |
1gkd_A_134 | 1gkd | A | 148 | 157 | WSAVTPLTFT | HHTTSS-EEE | aaaabaxbbb |
1gqo_A_82 | 1gqo | A | 87 | 96 | AVSSISLPVV | HHHTS-S-EE | aaaabaxwbb |
1gs5_A_17 | 1gs5 | A | 30 | 39 | YRESHQRPLV | HHTT--S-EE | aaaabaxxxb |
1gy8_A_11 | 1gy8 | A | 20 | 29 | LLRDTNHSVV | HHHH---EEE | aaaabaxxbb |
1hfc_*_127 | 1hfc | - | 141 | 150 | WSNVTPLTFT | HHTTSS-EEE | aaaabaxbbb |
1hy7_A_110 | 1hy7 | A | 124 | 133 | WEEVTPLTFS | HHTTSS-EEE | aaaabaxbbb |
1i76_A_106 | 1i76 | A | 120 | 129 | WSVASPLIFT | HHTTSS-EEE | aaaabapbbb |
1iae_*_24 | 1iae | - | 37 | 46 | LEEKTCIRFV | HHHHSS-EEE | aaaabaxbxb |
1ik6_A_155 | 1ik6 | A | 164 | 173 | AAIRGDDPVV | HHHHSSS-EE | aaaaxaxwbb |
1ik6_A_217 | 1ik6 | A | 224 | 233 | AAERVKASVE | HHHTSSS-EE | aaaabapxbx |
1j5p_A_86 | 1j5p | A | 95 | 104 | ELKNSPARVF | HHHT-S-EEE | aaaaxaxbbb |
1jk3_A_127 | 1jk3 | A | 141 | 150 | WSNVTPLKFS | HHTTSS-EEE | aaaabaxbbb |
1jx6_A_141 | 1jx6 | A | 147 | 156 | VLDSTNTKLI | HHHH-S-EEE | aaaabaxxbb |
1k3s_A_53 | 1k3s | A | 62 | 71 | LNYTSAVTIG | HHHHSSSEEE | aaaaxabxbb |
1kek_A_1046 | 1kek | A | 1055 | 1064 | EAESFPGPSL | HHHHSSS-EE | aaaaxabxbb |
1kek_A_430 | 1kek | A | 441 | 450 | IGDNTDLFAQ | HHHHSS-EEE | aaaabaxxbb |
1kew_A_11 | 1kew | A | 20 | 29 | IIKNTQDTVV | HHHH-S-EEE | aaaabaxbbb |
1l6j_A_134 | 1l6j | A | 148 | 157 | WSAVTPLTFT | HHHTSS-EEE | aaaabaxbbb |
1mjh_A_141 | 1mjh | A | 146 | 155 | VIKKSNKPVL | HHHH--S-EE | aaaaxaxpbx |
1ml4_A_113 | 1ml4 | A | 117 | 126 | AAEVAEVPVI | HHHT-SS-EE | aaaababwbb |
1ni4_B_150 | 1ni4 | B | 159 | 168 | SAIRDNNPVV | HHHHSSS-EE | aaaaxabpbb |
1nmo_A_221 | 1nmo | A | 230 | 239 | LNENTDLDVT | HHHHSS-EEE | aaaabaxbbb |
1nox_*_75 | 1nox | - | 75 | 84 | HVEEAPVVLV | HHHHSSEEEE | aaaaxabbxb |
1nv8_A_134 | 1nv8 | A | 139 | 148 | VAKFSDAIVF | HHHHSS-EEE | aaaabaxxbb |
1o97_D_103 | 1o97 | D | 106 | 115 | LASKTGYGFA | HHHTSS-EEE | aaaabaxxbb |
1ols_B_168 | 1ols | B | 177 | 186 | SCIEDKNPCI | HHHHSSS-EE | aaaaxabwbb |
1qhx_A_16 | 1qhx | A | 23 | 32 | LQSVLPEPWL | HHHHSSS-EE | aaaapaxwbx |
1qs0_B_153 | 1qs0 | B | 162 | 171 | ASIECDDPVI | HHHHSSS-EE | aaaapabwbx |
1rm8_A_145 | 1rm8 | A | 159 | 168 | WQNVTPLTFE | HHTTSS-EEE | aaaabaxbbb |
1tfr_*_101 | 1tfr | - | 115 | 124 | LKAYMPYIVM | HHHHSSSEEE | aaaaxabxbx |
1ukz_*_29 | 1ukz | - | 36 | 45 | LVKDYSFVHL | HHHHSS-EEE | aaaabaxbxb |
1umd_B_151 | 1umd | B | 160 | 169 | AAIRDEDPVV | HHHH-SS-EE | aaaaxaxwbx |
1vi2_A_161 | 1vi2 | A | 171 | 180 | VNENTDCVVT | HHHHSS-EEE | aaaabaxxbb |
1vi9_A_136 | 1vi9 | A | 136 | 143 | GLPASDII.. | HHHH-SEE.. | aaaaxabb.. |
2ay1_A_233 | 2ay1 | A | 243 | 252 | IASRIPEVLI | HHHH-SSEEE | aaaaxabbbb |
3pmg_A_339 | 3pmg | A | 343 | 352 | VANATKIALY | HHHTSSS-EE | aaaabaxxbb |
830c_A_131 | 830c | A | 145 | 154 | WSDVTPLNFT | HHTTSS-EEE | aaaabaxbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1gy8_A_11 | 1gy8 | A | AC1NAD BINDING SITE FOR CHAIN A | Y - 11 |
1gy8_A_11 | 1gy8 | A | AC1NAD BINDING SITE FOR CHAIN A | I - 12 |
1gy8_A_11 | 1gy8 | A | AC1NAD BINDING SITE FOR CHAIN A | D - 32 |
1ols_B_168 | 1ols | B | KBPOTASSIUM-BINDING SITE IN THE BETA-SUBUNIT | C - 178 |
1ols_B_168 | 1ols | B | KBPOTASSIUM-BINDING SITE IN THE BETA-SUBUNIT | D - 181 |
1ols_B_168 | 1ols | B | KBPOTASSIUM-BINDING SITE IN THE BETA-SUBUNIT | N - 183 |
Clusters included in this Subclass |
CLUSTER: HE.2.35 |
CLUSTER: HE.3.162 |
CLUSTER: HE.3.18 |
CLUSTER: HE.4.16 |
CLUSTER: HE.4.98 |
CLUSTER: HE.5.47 |
CLUSTER: HE.5.59 |
CLUSTER: HE.6.24 |