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Information on SUBCLASS 2.2.2
Subclass Accession number: 5348
Subclass: 2.2.2 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 47

Average sequence ID (%) : 13.5 +/- 18.7
Average RMSD (Å) : 0.681 +/- 0.186

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XXXXXX
(φψ)-conformation: aapabb
Pattern: [agilvwy]xxxx[adegnpqs]xx[cfiltvw]x
Conservation:-0.438-0.3510.1210.0300.4541.115-1.658-1.2921.6280.391
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a88_A_2351a88   A238247SAELLANATLHHHHSTTEEEaaaaxabbbb
1a9x_B_17491a9x   B17571766KFLETDIPVFHHTTS---EEaaaabaxwbb
1aj2_*_711aj2   -8594IAQRFEVWISHHHH---EEEaaaabaxxbb
1bfd_*_5001bfd   -509518EALSAKGPVLHHHH-SS-EEaaaaxabxbb
1bkj_A_691bkj   A6978YVESAAEFLVHHHHSSEEEEaaaaxabbbb
1bxk_A_121bxk   A2130IINETSDAVVHHHH-S-EEEaaaabaxbbb
1c7n_A_1831c7n   A192201IVLKSDLMLWHHHHSS-EEEaaaabaxxbb
1cgl_A_1271cgl   A141150WSDVTPLTFTHHTTSS-EEEaaaabaxbbb
1f0x_A_4001f0x   A411420YFKQAEGDFFHHHHSS-EEEaaaaxaxbbb
1f5v_A_691f5v   A6978HVAQAAEFWVHHHHSSEEEEaaaapabbbb
1gkd_A_1341gkd   A148157WSAVTPLTFTHHTTSS-EEEaaaabaxbbb
1gqo_A_821gqo   A8796AVSSISLPVVHHHTS-S-EEaaaabaxwbb
1gs5_A_171gs5   A3039YRESHQRPLVHHTT--S-EEaaaabaxxxb
1gy8_A_111gy8   A2029LLRDTNHSVVHHHH---EEEaaaabaxxbb
1hfc_*_1271hfc   -141150WSNVTPLTFTHHTTSS-EEEaaaabaxbbb
1hy7_A_1101hy7   A124133WEEVTPLTFSHHTTSS-EEEaaaabaxbbb
1i76_A_1061i76   A120129WSVASPLIFTHHTTSS-EEEaaaabapbbb
1iae_*_241iae   -3746LEEKTCIRFVHHHHSS-EEEaaaabaxbxb
1ik6_A_1551ik6   A164173AAIRGDDPVVHHHHSSS-EEaaaaxaxwbb
1ik6_A_2171ik6   A224233AAERVKASVEHHHTSSS-EEaaaabapxbx
1j5p_A_861j5p   A95104ELKNSPARVFHHHT-S-EEEaaaaxaxbbb
1jk3_A_1271jk3   A141150WSNVTPLKFSHHTTSS-EEEaaaabaxbbb
1jx6_A_1411jx6   A147156VLDSTNTKLIHHHH-S-EEEaaaabaxxbb
1k3s_A_531k3s   A6271LNYTSAVTIGHHHHSSSEEEaaaaxabxbb
1kek_A_10461kek   A10551064EAESFPGPSLHHHHSSS-EEaaaaxabxbb
1kek_A_4301kek   A441450IGDNTDLFAQHHHHSS-EEEaaaabaxxbb
1kew_A_111kew   A2029IIKNTQDTVVHHHH-S-EEEaaaabaxbbb
1l6j_A_1341l6j   A148157WSAVTPLTFTHHHTSS-EEEaaaabaxbbb
1mjh_A_1411mjh   A146155VIKKSNKPVLHHHH--S-EEaaaaxaxpbx
1ml4_A_1131ml4   A117126AAEVAEVPVIHHHT-SS-EEaaaababwbb
1ni4_B_1501ni4   B159168SAIRDNNPVVHHHHSSS-EEaaaaxabpbb
1nmo_A_2211nmo   A230239LNENTDLDVTHHHHSS-EEEaaaabaxbbb
1nox_*_751nox   -7584HVEEAPVVLVHHHHSSEEEEaaaaxabbxb
1nv8_A_1341nv8   A139148VAKFSDAIVFHHHHSS-EEEaaaabaxxbb
1o97_D_1031o97   D106115LASKTGYGFAHHHTSS-EEEaaaabaxxbb
1ols_B_1681ols   B177186SCIEDKNPCIHHHHSSS-EEaaaaxabwbb
1qhx_A_161qhx   A2332LQSVLPEPWLHHHHSSS-EEaaaapaxwbx
1qs0_B_1531qs0   B162171ASIECDDPVIHHHHSSS-EEaaaapabwbx
1rm8_A_1451rm8   A159168WQNVTPLTFEHHTTSS-EEEaaaabaxbbb
1tfr_*_1011tfr   -115124LKAYMPYIVMHHHHSSSEEEaaaaxabxbx
1ukz_*_291ukz   -3645LVKDYSFVHLHHHHSS-EEEaaaabaxbxb
1umd_B_1511umd   B160169AAIRDEDPVVHHHH-SS-EEaaaaxaxwbx
1vi2_A_1611vi2   A171180VNENTDCVVTHHHHSS-EEEaaaabaxxbb
1vi9_A_1361vi9   A136143GLPASDII..HHHH-SEE..aaaaxabb..
2ay1_A_2332ay1   A243252IASRIPEVLIHHHH-SSEEEaaaaxabbbb
3pmg_A_3393pmg   A343352VANATKIALYHHHTSSS-EEaaaabaxxbb
830c_A_131830c   A145154WSDVTPLNFTHHTTSS-EEEaaaabaxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a9x_B_17491a9x   B     CYG2-AMINO-4-(AMINO-3-OXO-PROPYLSULFANYLCARBONYL)-BUTYRIC ACID G - 1767
1aj2_*_711aj2   *     2PH[7,8-DIHYDRO-PTERIN-6-YL METHANYL]-PHOSPHONOPHOSPHATE D - 96
1bkj_A_691bkj   A     FMNFLAVIN MONONUCLEOTIDE Y - 69
1bxk_A_121bxk   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE F - 12
1bxk_A_121bxk   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 13
1bxk_A_121bxk   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 14
1bxk_A_121bxk   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 32
1c7n_A_1831c7n   A     PLPPYRIDOXAL-5'-PHOSPHATE D - 203
1f5v_A_691f5v   A     FMNFLAVIN MONONUCLEOTIDE H - 69
1gkd_A_1341gkd   A     CACALCIUM ION V - 136
1gkd_A_1341gkd   A     CACALCIUM ION D - 139
1gkd_A_1341gkd   A     CACALCIUM ION R - 143
1gqo_A_821gqo   A     GOLGLYCEROL Y - 82
1gqo_A_821gqo   A     GOLGLYCEROL R - 85
1gqo_A_821gqo   A     GOLGLYCEROL D - 86
1gqo_A_821gqo   A     GOLGLYCEROL S - 90
1gqo_A_821gqo   A     GOLGLYCEROL H - 99
1gs5_A_171gs5   A     NLGN-ACETYL-L-GLUTAMATE H - 42
1gs5_A_171gs5   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER H - 42
1gy8_A_111gy8   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE Y - 11
1gy8_A_111gy8   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 12
1gy8_A_111gy8   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 13
1gy8_A_111gy8   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 31
1gy8_A_111gy8   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE D - 32
1jx6_A_1411jx6   A     CACALCIUM ION E - 145
1jx6_A_1411jx6   A     CACALCIUM ION L - 148
1jx6_A_1411jx6   A     CACALCIUM ION D - 149
1k3s_A_531k3s   A     MSESELENOMETHIONINE T - 55
1k3s_A_531k3s   A     MSESELENOMETHIONINE F - 59
1kek_A_10461kek   A     CACALCIUM ION E - 1055
1kek_A_10461kek   A     CACALCIUM ION A - 1056
1kek_A_10461kek   A     CACALCIUM ION E - 1057
1kek_A_10461kek   A     CACALCIUM ION S - 1058
1kek_A_10461kek   A     CACALCIUM ION F - 1059
1kek_A_10461kek   A     CACALCIUM ION P - 1060
1kek_A_10461kek   A     CACALCIUM ION G - 1061
1kek_A_10461kek   A     CACALCIUM ION P - 1062
1kek_A_10461kek   A     CACALCIUM ION S - 1063
1kew_A_111kew   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE F - 11
1kew_A_111kew   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 31
1mjh_A_1411mjh   A     MNMANGANESE (II) ION S - 141
1mjh_A_1411mjh   A     ATPADENOSINE-5'-TRIPHOSPHATE S - 141
1mjh_A_1411mjh   A     MNMANGANESE (II) ION V - 142
1mjh_A_1411mjh   A     ATPADENOSINE-5'-TRIPHOSPHATE V - 142
1mjh_A_1411mjh   A     ATPADENOSINE-5'-TRIPHOSPHATE T - 143
1mjh_A_1411mjh   A     ATPADENOSINE-5'-TRIPHOSPHATE E - 144
1ml4_A_1131ml4   A     PALN-(PHOSPHONACETYL)-L-ASPARTIC ACID A - 128
1ni4_B_1501ni4   B     MSESELENOMETHIONINE I - 157
1ni4_B_1501ni4   B     MSESELENOMETHIONINE K - 158
1ni4_B_1501ni4   B     MSESELENOMETHIONINE I - 161
1nmo_A_2211nmo   A     MSESELENOMETHIONINE T - 234
1nmo_A_2211nmo   A     MSESELENOMETHIONINE D - 235
1nmo_A_2211nmo   A     MSESELENOMETHIONINE L - 236
1nox_*_751nox   *     FMNFLAVIN MONONUCLEOTIDE H - 75
1nv8_A_1341nv8   A     SAMS-ADENOSYLMETHIONINE A - 134
1nv8_A_1341nv8   A     SAMS-ADENOSYLMETHIONINE I - 135
1nv8_A_1341nv8   A     SAMS-ADENOSYLMETHIONINE T - 150
1nv8_A_1341nv8   A     SAMS-ADENOSYLMETHIONINE D - 151
1qhx_A_161qhx   A     MGMAGNESIUM ION K - 16
1qhx_A_161qhx   A     ATPADENOSINE-5'-TRIPHOSPHATE K - 16
1qhx_A_161qhx   A     MGMAGNESIUM ION S - 17
1qhx_A_161qhx   A     ATPADENOSINE-5'-TRIPHOSPHATE S - 17
1qhx_A_161qhx   A     ATPADENOSINE-5'-TRIPHOSPHATE G - 18
1qhx_A_161qhx   A     ATPADENOSINE-5'-TRIPHOSPHATE I - 19
1qhx_A_161qhx   A     ATPADENOSINE-5'-TRIPHOSPHATE R - 21
1qs0_B_1531qs0   B     MSESELENOMETHIONINE P - 153
1qs0_B_1531qs0   B     MSESELENOMETHIONINE A - 156
1qs0_B_1531qs0   B     MSESELENOMETHIONINE K - 157
1qs0_B_1531qs0   B     MSESELENOMETHIONINE L - 159
1qs0_B_1531qs0   B     MSESELENOMETHIONINE L - 160
1qs0_B_1531qs0   B     MSESELENOMETHIONINE I - 164
1qs0_B_1531qs0   B     MSESELENOMETHIONINE E - 165
1qs0_B_1531qs0   B     MSESELENOMETHIONINE P - 169
1qs0_B_1531qs0   B     MSESELENOMETHIONINE V - 170
1qs0_B_1531qs0   B     MSESELENOMETHIONINE I - 171
1ukz_*_291ukz   *     ADPADENOSINE-5'-DIPHOSPHATE K - 29
1ukz_*_291ukz   *     AMPADENOSINE MONOPHOSPHATE K - 29
1ukz_*_291ukz   *     ADPADENOSINE-5'-DIPHOSPHATE G - 30
1ukz_*_291ukz   *     ADPADENOSINE-5'-DIPHOSPHATE T - 31
1ukz_*_291ukz   *     ADPADENOSINE-5'-DIPHOSPHATE Q - 32
1ukz_*_291ukz   *     AMPADENOSINE MONOPHOSPHATE S - 46
2ay1_A_2332ay1   A     PLPPYRIDOXAL-5'-PHOSPHATE A - 254
2ay1_A_2332ay1   A     PLPPYRIDOXAL-5'-PHOSPHATE S - 255
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gy8_A_111gy8   A AC1NAD BINDING SITE FOR CHAIN AY - 11
1gy8_A_111gy8   A AC1NAD BINDING SITE FOR CHAIN AI - 12
1gy8_A_111gy8   A AC1NAD BINDING SITE FOR CHAIN AD - 32
1ols_B_1681ols   B KBPOTASSIUM-BINDING SITE IN THE BETA-SUBUNITC - 178
1ols_B_1681ols   B KBPOTASSIUM-BINDING SITE IN THE BETA-SUBUNITD - 181
1ols_B_1681ols   B KBPOTASSIUM-BINDING SITE IN THE BETA-SUBUNITN - 183

Clusters included in this Subclass
CLUSTER: HE.2.35
CLUSTER: HE.3.162
CLUSTER: HE.3.18
CLUSTER: HE.4.16
CLUSTER: HE.4.98
CLUSTER: HE.5.47
CLUSTER: HE.5.59
CLUSTER: HE.6.24