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Information on SUBCLASS 2.3.5
Subclass Accession number: 5367
Subclass: 2.3.5 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 15

Average sequence ID (%) : 15.2 +/- 17.0
Average RMSD (Å) : 0.527 +/- 0.144

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 225-270
Consensus Sequence: XXhpXh
(φψ)-conformation: aababb
Pattern: [afilmvy]xxx[acfy][DEQS]x[acgilpv][ACGILMTV]
Conservation:0.100-0.982-0.646-0.4160.2862.393-0.656-0.3520.271
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8y_*_231a8y   -2634VFKKYEVLAHHHH-SEEEaaaababbb
1b7g_O_711b7g   O7482LIKTSDIVVHHHH-SEEEaaaaxabbx
1c7q_A_551c7q   A6876IRNHSDALVHHHH-SEEEaaaababbb
1dmg_A_2021dmg   A204212DMLKYDYLVHHHHSSEEEaaaaxabbb
1e8c_A_3991e8c   A401409AEEFADVAVHHHH-SEEEaaaababbb
1iq7_A_4801iq7   A480488FDEYFSEGCHHHHSSEEEaaaaxabeb
1j23_A_641j23   A7179LKEAYSRPIHHHH-SEEEaaaababxb
1jax_A_581jax   A6169AAEACDIAVHHHH-SEEEaaaaxabbb
1js1_X_931js1   X100108MGCYCDIIGHHHT-SEEEaaaababbb
1ll2_A_451ll2   A5159LEIVFDEVIHHHH-SEEEaaaababbb
1m6s_A_1831m6s   A186194YAGYADSVMHHHT-SEEEaaaababbb
1tpl_A_2371tpl   A244252MFSYADGCTHHHTSSEEEaaaababbb
1uj2_A_1431uj2   A145153VRDLFQMKLHHHH-SEEEaaaaxabbb
1v8a_A_501v8a   A5361MIRLADAVVHHHH-SEEEaaaaxabbb
2dnj_A_192dnj   A2836IVRRYDIVLHHHT-SEEEaaaababbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e8c_A_3991e8c   A     MSESELENOMETHIONINE A - 399
1e8c_A_3991e8c   A     MSESELENOMETHIONINE I - 400
1e8c_A_3991e8c   A     MSESELENOMETHIONINE A - 401
1e8c_A_3991e8c   A     MSESELENOMETHIONINE E - 402
1e8c_A_3991e8c   A     MSESELENOMETHIONINE A - 408
1e8c_A_3991e8c   A     MSESELENOMETHIONINE V - 409
1e8c_A_3991e8c   A     MSESELENOMETHIONINE V - 410
1js1_X_931js1   X     PO4PHOSPHATE ION R - 110
1m6s_A_1831m6s   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) M - 194
1m6s_A_1831m6s   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) C - 196
1m6s_A_1831m6s   A     CACALCIUM ION C - 196
2dnj_A_192dnj   A     NAGN-ACETYL-D-GLUCOSAMINE A - 19
2dnj_A_192dnj   A     NAGN-ACETYL-D-GLUCOSAMINE T - 20
2dnj_A_192dnj   A     NAGN-ACETYL-D-GLUCOSAMINE L - 21

Clusters included in this Subclass
CLUSTER: HE.2.27