Information on SUBCLASS 2.3.8 |
Subclass Accession number: 5370
Subclass: 2.3.8 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 10 Average sequence ID (%) : 10.4 +/- 16.9 Average RMSD (Å) : 0.690 +/- 0.145 Consensus geometry
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Consensus Sequence: | pXhpXX |
(φψ)-conformation: | aababb |
Pattern: | [aflv] | x | [AEKRS] | [aefklm] | [afgitv] | [DKPS] | x | x | [aclvy] |
Conservation: | -0.009 | -0.797 | 1.305 | -0.703 | -0.505 | 1.990 | -0.919 | -0.035 | -0.328 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1f0k_A_248 | 1f0k | A | 251 | 259 | AYAWADVVV | HHHH-SEEE | aaaaxabbb |
1h76_A_145 | 1h76 | A | 149 | 157 | VASFFSSSC | HHHHSSEEE | aaaaxabbb |
1hdi_A_143 | 1hdi | A | 153 | 161 | LSALGDVYV | HHHT-SEEE | aaaababbb |
1iej_A_148 | 1iej | A | 152 | 160 | VAKFFSASC | HHHHSSEEE | aaaaxabbb |
1lzj_A_198 | 1lzj | A | 200 | 208 | FLSEVDYLV | HHHH-SEEE | aaaababbb |
1mdw_A_328 | 1mdw | A | 331 | 339 | FLRHYSRLE | HHHH--EEE | aaaaxabbb |
1n7m_H_183 | 1n7m | H | 185 | 193 | DYEKHKVYA | HHHH--EEE | aaaabaxbb |
1q5d_A_29 | 1q5d | A | 35 | 43 | LREATPIFY | HHHH-SEEE | aaaababbx |
4ubp_A_73 | 4ubp | A | 73 | 81 | VPEMIDDIQ | HHHH-SEEE | aaaaxabbb |
7req_B_606 | 7req | B | 609 | 617 | AEKLIDGRL | HHHH--EEE | aaaababbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1lzj_A_198 | 1lzj | A | HGMERCURY (II) ION | F - 200 |
1lzj_A_198 | 1lzj | A | HGMERCURY (II) ION | L - 207 |
1lzj_A_198 | 1lzj | A | HGMERCURY (II) ION | V - 208 |
1lzj_A_198 | 1lzj | A | HGMERCURY (II) ION | C - 209 |
1lzj_A_198 | 1lzj | A | HGMERCURY (II) ION | V - 210 |
1lzj_A_198 | 1lzj | A | UDPURIDINE-5'-DIPHOSPHATE | V - 210 |
Clusters included in this Subclass |
CLUSTER: HE.1.33 |
CLUSTER: HE.2.78 |
CLUSTER: HE.3.285 |