Information on SUBCLASS 2.4.12 |
Subclass Accession number: 5398
Subclass: 2.4.12 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0046914 (>50 %) |
Number of loops: 3 Average sequence ID (%) : 13.7 +/- 12.9 Average RMSD (Å) : 0.900 +/- 0.100 Consensus geometry
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Consensus Sequence: | XXcLhX |
(φψ)-conformation: | aalapa |
Pattern: | [AI] | x | [DE] | [EQR] | [IMV] | x | [AGK] | [DGT] | [GN] | [L] | [GIL] | [GST] | x | [LT] | x | x | x |
Conservation: | 0.088 | -0.946 | 1.734 | 0.577 | 0.756 | -0.140 | -0.498 | -0.498 | 1.358 | 1.922 | -1.126 | -0.140 | -0.767 | 0.430 | -1.126 | -1.305 | -0.319 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1d3v_A_254 | 1d3v | A | 260 | 276 | ITEEIYKTGLLSGLDIM | HHHHHHHHT-EEEEEEE | aaaaaaaavapabbbbb |
1j1n_A_254 | 1j1n | A | 254 | 270 | AREQMFGGNLGGFTHDW | HHHHHHHTT-EEEEEEE | aaaaaaaalaxabbbbx |
1lkd_A_218 | 1lkd | A | 224 | 240 | AFDRVDADGLITSTLGR | HHHHHHTTT-EEEEEEE | aaaaaaaavaxabxxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1j1n_A_254 | 1j1n | A | MAW4-DEOXY-D-MANNURONIC ACID | R - 255 |
1j1n_A_254 | 1j1n | A | MAW4-DEOXY-D-MANNURONIC ACID | D - 269 |
1j1n_A_254 | 1j1n | A | MAVD-MANNURONIC ACID | D - 269 |
1j1n_A_254 | 1j1n | A | MAW4-DEOXY-D-MANNURONIC ACID | W - 270 |
1j1n_A_254 | 1j1n | A | MAVD-MANNURONIC ACID | W - 270 |
1j1n_A_254 | 1j1n | A | LGUL-GLUCURONIC ACID | W - 270 |
1lkd_A_218 | 1lkd | A | BP62',6'-DICHLORO-BIPHENYL-2,6-DIOL | T - 235 |
1lkd_A_218 | 1lkd | A | P6GHEXAETHYLENE GLYCOL | T - 235 |
1lkd_A_218 | 1lkd | A | P6GHEXAETHYLENE GLYCOL | S - 236 |
1lkd_A_218 | 1lkd | A | FE2FE (II) ION | H - 241 |
1lkd_A_218 | 1lkd | A | BP62',6'-DICHLORO-BIPHENYL-2,6-DIOL | H - 241 |
Clusters included in this Subclass |
CLUSTER: HE.3.238 |