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Information on SUBCLASS 2.4.1
Subclass Accession number: 540
Subclass: 2.4.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 73

Average sequence ID (%) : 13.8 +/- 16.5
Average RMSD (Å) : 0.310 +/- 0.146

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 90-135 rho (°): 315-360
Consensus Sequence: XXpcXX
(φψ)-conformation: bbllbp
Pattern: xxx[dehknqrstwy][degknqrs]xxx
Conservation:-0.207-0.797-0.6271.2491.794-0.193-1.039-0.181
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a7s_*_1781a7s   -179186LVCEGLAHEEETTEEExbblvbxa
1a8d_*_1801a8d   -183190LYINGVLMEEETTEEEbbblvbxa
1aiu_*_761aiu   -7986FFKKGQKVEEETTEEEbbblvbxa
1arb_*_251arb   -2835YSKSGTLAEEETTEEEbbblvbpa
1azz_A_1981azz   A199206LNYNGLTYEEETTEEEbxblvbba
1b8a_A_3521b8a   A355362LEYRGVEIEEETTEEEbbblvbxa
1bd0_A_3661bd0   A368375FFRHKRIMEEETTEEExbbvvbxa
1c3c_A_1351c3c   A138145GRTHGVHAEEETTEEExbbvvbxa
1cgh_A_1981cgh   A199206LLCNNVAHEEETTEEEbxblvbxa
1cvr_A_3791cvr   A382389LSDDGDMVEEETTEEEbbblvbxa
1d4t_A_411d4t   A4552VLYHGYIYEEETTEEEbxblvbbx
1d5t_A_2571d5t   A259266IMENGKVVEEETTEEExbblvbxa
1d7y_A_3511d7y   A356363ELQKGRIVEEETTEEExbblvxxa
1dhk_B_1081dhk   B111118IDVNNNDIEEETTEEEbbblvbxa
1dof_A_1371dof   A140147GRTHGQWAEEETTEEExbbvvbxb
1e1o_A_4121e1o   A415422FFIGGREIEEETTEEEbbbvvbxa
1eov_A_4691eov   A472479FFMRGEEIEEETTEEEbbblvbxa
1eq9_A_1981eq9   A199206LVANGAQIEEETTEEEbbblvbxa
1eq9_A_301eq9   A3340LRLSGSHREEETTEEExbblvbpa
1eu1_A_151eu1   A2027RVENGRAVEEETTEEEbbblvbxa
1exm_A_3851exm   A388395IREGGRTVEEETTEEEbbbvvbxa
1f8e_A_2021f8e   A205212IWYNRRPVEEETTEEEbbbvvbxa
1f8e_A_2501f8e   A256263YFKEGKILEEETTEEEbbblvbxa
1f9m_A_911f9m   A94101ILKENSVVEEETTEEEbbblvbxa
1fjs_A_1981fjs   A201208TRFKDTYFEEETTEEEbxblvbbb
1g6h_A_2221g6h   A225232VMFNGQIIEEETTEEEbbblvbxa
1g8m_A_2621g8m   A265272SFKHVSPAEEETTEEEbbbllbxa
1gkp_A_4251gkp   A429436VTVRGKVAEEETTEEEbbblvbxa
1h30_A_3901h30   A393400IKVNRDAVEEETTEEEbbblgxxa
1h80_A_1911h80   A192199TERNGRLHEEETTEEEbxblvbxb
1hd2_A_1281hd2   A131138VVQDGIVKEEETTEEExbblvbxa
1hn0_A_4981hn0   A498504AWRHEGN.EEETTEE.bbblvbp.
1hp1_A_4741hp1   A478484LKIKGEP.EEETTEE.xbblvbx.
1ihk_A_1361ihk   A140147FEENWYNTEEETTEEEpablvxbb
1ji0_A_2071ji0   A210217VLETGQIVEEETTEEEbxblvbxa
1jp4_A_1341jp4   A139146IAYEGKAIEEETTEEEbbblvbxa
1jz7_A_6511jz7   A656663VALDGKPLEEETTEEEbbblvxwa
1k5n_A_1091k5n   A116123HAYDGKDYEEETTEEEbbblvbpa
1k7w_A_1561k7w   A159166GYTHLQKAEEETTEEEbbbvlbpa
1ka1_A_1571ka1   A162169LIVDGVVQEEETTEEEbbblvbxa
1kjq_A_2211kjq   A224231RQEDGDYREEETTEEEbbblvbxa
1kli_H_1981kli   H201208THYRGTWYEEETTEEEbxblvbbb
1kws_A_2261kws   A230237QVQDGRVVEEETTEEExbbvvbxa
1lqv_A_1111lqv   A116123VAVNGSSFEEETTEEEbbblvbpa
1m1h_A_511m1h   A5663IRAQGKEKEEETTEEEbbblvbxa
1mk4_A_441mk4   A4653TSEHNSMTEESSSSEEbbblvbpa
1mtp_B_3421mtp   B346353VRRRGAILEEETTEEExbblvbxa
1n9w_A_3361n9w   A339346LLFRGLEIEEETTEEEbbblvbxa
1o50_A_381o50   A4148VARDNKLVEEETTEEEbbblvbxa
1onc_*_861onc   -8996TCENQAPVEEETTEEExbblvbwa
1osp_O_2221osp   O225232ITVNSKKTEEETTEEExbblvbxa
1p1m_A_171p1m   A2229EIENGTIKEEETTEEEbbblvbxa
1p57_B_301p57   B3340LRYDGAHLEEETTEEEbbblvbxa
1pbj_A_341pbj   A3744VVKEGVRVEEETTEEExbblvbxa
1pbj_A_981pbj   A101108VEEDDEIIEEETTEEEbbblvbxa
1pgs_*_2101pgs   -214221IAINNANTEEETTEEEbbblvbpa
1pj5_A_1741pj5   A178185EQSGGRVTEEETTEEExbbvvbxa
1pk6_C_1501pk6   C154161LYRSGVKVEEETTEEEbbblvbxa
1pzx_A_1881pzx   A193200HVEDGALIEEETTEEEbbblvbxb
1q2w_A_1111q2w   A116123ACYNGSPSEEETTEEExbblvbwa
1q2w_A_1481q2w   A151158NIDYDCVSEEETTEEEbbblUxxx
1q5n_A_1481q5n   A151158GRTWLQQAEEETTEEExbblvbpa
1qy1_A_511qy1   A5865TVRDEECSEEETTEEEbbblvbxb
1rj8_A_3181rj8   A322329VVVDEKPFEEETTEEExbblvbpa
1s83_A_1981s83   A199206VVCNGQLQEEETTEEEbbblvbxa
1ubl_L_4801ubl   L487494RIEDGKIGEEETTEEEbxblvbxa
1uvq_A_221uvq   A2734HEFDGDEQEEETTEEEbbblvbxa
1v47_A_721v47   A7582LLHGGERVEEETTEEEbbbvgxxa
1vdk_A_1821vdk   A185192GRTHLMDAEEETTEEExbbvvxpb
1vhm_A_1241vhm   A130137LVVKNQIIEEETTEEExbblvxxa
1zxq_*_631zxq   -6976FTCSGKQEEEETTEEEbbblvbbb
2mpr_A_2112mpr   A221228QSMLKGYNEEETTEEEbxbllbbb
4ubp_C_4494ubp   C450457VIKGGIIAEEETTEEEbxblvbxa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a7s_*_1781a7s   *     EOHETHANOL P - 178
1a7s_*_1781a7s   *     EOHETHANOL L - 179
1a7s_*_1781a7s   *     EOHETHANOL V - 180
1a7s_*_1781a7s   *     EOHETHANOL A - 189
1a7s_*_1781a7s   *     EOHETHANOL S - 190
1a7s_*_1781a7s   *     EOHETHANOL F - 191
1a7s_*_1781a7s   *     EOHETHANOL S - 192
1b8a_A_3521b8a   A     MNMANGANESE (II) ION D - 354
1b8a_A_3521b8a   A     ATPADENOSINE-5'-TRIPHOSPHATE D - 354
1b8a_A_3521b8a   A     MNMANGANESE (II) ION E - 361
1b8a_A_3521b8a   A     ATPADENOSINE-5'-TRIPHOSPHATE E - 361
1b8a_A_3521b8a   A     ATPADENOSINE-5'-TRIPHOSPHATE I - 362
1b8a_A_3521b8a   A     MNMANGANESE (II) ION S - 363
1b8a_A_3521b8a   A     ATPADENOSINE-5'-TRIPHOSPHATE S - 363
1b8a_A_3521b8a   A     MNMANGANESE (II) ION S - 364
1b8a_A_3521b8a   A     ATPADENOSINE-5'-TRIPHOSPHATE S - 364
1dhk_B_1081dhk   B     CACALCIUM ION R - 108
1dhk_B_1081dhk   B     CACALCIUM ION S - 110
1dhk_B_1081dhk   B     CACALCIUM ION D - 112
1dhk_B_1081dhk   B     CACALCIUM ION N - 115
1dhk_B_1081dhk   B     CACALCIUM ION N - 116
1dhk_B_1081dhk   B     CACALCIUM ION D - 117
1e1o_A_4121e1o   A     GOLGLYCEROL R - 412
1e1o_A_4121e1o   A     GOLGLYCEROL F - 413
1e1o_A_4121e1o   A     LYSLYSINE E - 414
1e1o_A_4121e1o   A     GOLGLYCEROL E - 414
1e1o_A_4121e1o   A     LYSLYSINE E - 421
1e1o_A_4121e1o   A     GOLGLYCEROL E - 421
1e1o_A_4121e1o   A     LYSLYSINE N - 424
1e1o_A_4121e1o   A     GOLGLYCEROL N - 424
1e1o_A_4121e1o   A     LYSLYSINE G - 425
1e1o_A_4121e1o   A     LYSLYSINE F - 426
1e1o_A_4121e1o   A     GOLGLYCEROL F - 426
1eu1_A_151eu1   A     GLCGLUCOSE K - 18
1fjs_A_1981fjs   A     Z34N-[2-[5-[AMINO(IMINO)METHYL]-2-HYDROXYPHENOXY]-3,5-DIFLUORO-6-[3-(4,5-DIHYDRO-1-METHYL-1H-IMIDAZOL-2-YL) PHENOXY]PYRIDIN-4-YL]-N-METHYLGLYCINE V - 213
1fjs_A_1981fjs   A     Z34N-[2-[5-[AMINO(IMINO)METHYL]-2-HYDROXYPHENOXY]-3,5-DIFLUORO-6-[3-(4,5-DIHYDRO-1-METHYL-1H-IMIDAZOL-2-YL) PHENOXY]PYRIDIN-4-YL]-N-METHYLGLYCINE S - 214
1fjs_A_1981fjs   A     Z34N-[2-[5-[AMINO(IMINO)METHYL]-2-HYDROXYPHENOXY]-3,5-DIFLUORO-6-[3-(4,5-DIHYDRO-1-METHYL-1H-IMIDAZOL-2-YL) PHENOXY]PYRIDIN-4-YL]-N-METHYLGLYCINE W - 215
1h80_A_1911h80   A     GOLGLYCEROL R - 197
1h80_A_1911h80   A     GOLGLYCEROL L - 198
1h80_A_1911h80   A     GOLGLYCEROL H - 199
1h80_A_1911h80   A     GOLGLYCEROL W - 200
1h80_A_1911h80   A     GOLGLYCEROL S - 201
1h80_A_1911h80   A     GOLGLYCEROL R - 202
1h80_A_1911h80   A     GOLGLYCEROL E - 207
1h80_A_1911h80   A     GOLGLYCEROL R - 208
1h80_A_1911h80   A     GOLGLYCEROL I - 209
1h80_A_1911h80   A     GOLGLYCEROL K - 210
1ihk_A_1361ihk   A     PO4PHOSPHATE ION Q - 139
1ji0_A_2071ji0   A     MSESELENOMETHIONINE V - 210
1ji0_A_2071ji0   A     MSESELENOMETHIONINE E - 212
1ji0_A_2071ji0   A     ATPADENOSINE-5'-TRIPHOSPHATE G - 214
1ji0_A_2071ji0   A     MSESELENOMETHIONINE V - 217
1ji0_A_2071ji0   A     MSESELENOMETHIONINE L - 218
1jp4_A_1341jp4   A     MGMAGNESIUM ION L - 136
1jz7_A_6511jz7   A     DMSDIMETHYL SULFOXIDE L - 651
1jz7_A_6511jz7   A     GALD-GALACTOSE D - 659
1jz7_A_6511jz7   A     DMSDIMETHYL SULFOXIDE P - 669
1k5n_A_1091k5n   A     GOLGLYCEROL R - 111
1k5n_A_1091k5n   A     GOLGLYCEROL Q - 115
1k5n_A_1091k5n   A     GOLGLYCEROL D - 122
1k5n_A_1091k5n   A     GOLGLYCEROL A - 125
1k7w_A_1561k7w   A     AS1ARGININOSUCCINATE T - 161
1k7w_A_1561k7w   A     AS1ARGININOSUCCINATE H - 162
1k7w_A_1561k7w   A     AS1ARGININOSUCCINATE A - 166
1kjq_A_2211kjq   A     ADPADENOSINE-5'-DIPHOSPHATE H - 223
1kjq_A_2211kjq   A     EDO1,2-ETHANEDIOL R - 224
1kjq_A_2211kjq   A     MGMAGNESIUM ION Q - 225
1kjq_A_2211kjq   A     ADPADENOSINE-5'-DIPHOSPHATE Q - 225
1kjq_A_2211kjq   A     EDO1,2-ETHANEDIOL E - 226
1kjq_A_2211kjq   A     ADPADENOSINE-5'-DIPHOSPHATE G - 228
1kjq_A_2211kjq   A     EDO1,2-ETHANEDIOL Y - 230
1kjq_A_2211kjq   A     EDO1,2-ETHANEDIOL R - 231
1kjq_A_2211kjq   A     EDO1,2-ETHANEDIOL E - 232
1kjq_A_2211kjq   A     EDO1,2-ETHANEDIOL W - 234
1kli_H_1981kli   H     BENBENZAMIDINE V - 213
1kli_H_1981kli   H     BENBENZAMIDINE S - 214
1kli_H_1981kli   H     BENBENZAMIDINE W - 215
1lqv_A_1111lqv   A     PTYPHOSPHATIDYLETHANOLAMINE F - 114
1lqv_A_1111lqv   A     PTYPHOSPHATIDYLETHANOLAMINE V - 116
1lqv_A_1111lqv   A     NAGN-ACETYL-D-GLUCOSAMINE V - 118
1lqv_A_1111lqv   A     PTYPHOSPHATIDYLETHANOLAMINE V - 118
1lqv_A_1111lqv   A     NAGN-ACETYL-D-GLUCOSAMINE N - 119
1lqv_A_1111lqv   A     PTYPHOSPHATIDYLETHANOLAMINE F - 123
1lqv_A_1111lqv   A     PTYPHOSPHATIDYLETHANOLAMINE V - 124
1pbj_A_341pbj   A     MSESELENOMETHIONINE V - 37
1pbj_A_341pbj   A     MSESELENOMETHIONINE V - 44
1pbj_A_341pbj   A     MSESELENOMETHIONINE G - 45
1pbj_A_341pbj   A     MSESELENOMETHIONINE I - 46
1pbj_A_341pbj   A     MSESELENOMETHIONINE V - 47
1pbj_A_981pbj   A     MSESELENOMETHIONINE R - 98
1pbj_A_981pbj   A     MSESELENOMETHIONINE L - 99
1pbj_A_981pbj   A     MSESELENOMETHIONINE V - 101
1pbj_A_981pbj   A     MSESELENOMETHIONINE I - 108
1pbj_A_981pbj   A     MSESELENOMETHIONINE G - 109
1pbj_A_981pbj   A     MSESELENOMETHIONINE V - 110
1pbj_A_981pbj   A     MSESELENOMETHIONINE I - 111
1pbj_A_981pbj   A     MSESELENOMETHIONINE S - 112
1pj5_A_1741pj5   A     FADFLAVIN-ADENINE DINUCLEOTIDE V - 174
1pj5_A_1741pj5   A     FADFLAVIN-ADENINE DINUCLEOTIDE T - 175
1pzx_A_1881pzx   A     PLMPALMITIC ACID V - 194
1pzx_A_1881pzx   A     PLMPALMITIC ACID L - 199
1qy1_A_511qy1   A     PRZ2-ISOBUTYL-3-METHOXYPYRAZINE L - 54
1qy1_A_511qy1   A     PRZ2-ISOBUTYL-3-METHOXYPYRAZINE F - 56
1qy1_A_511qy1   A     PRZ2-ISOBUTYL-3-METHOXYPYRAZINE M - 69
1ubl_L_4801ubl   L     FNE(MU-SULPHIDO)-BIS(MU-CYS,S)-[TRICARBONYLIRON-DI-(CYS, S)NICKEL(II)](FE-NI) G - 480
1ubl_L_4801ubl   L     FNE(MU-SULPHIDO)-BIS(MU-CYS,S)-[TRICARBONYLIRON-DI-(CYS, S)NICKEL(II)](FE-NI) L - 482
1ubl_L_4801ubl   L     MGMAGNESIUM ION Q - 497
1ubl_L_4801ubl   L     MGMAGNESIUM ION L - 498
1ubl_L_4801ubl   L     MGMAGNESIUM ION V - 499
1vhm_A_1241vhm   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID E - 125
1vhm_A_1241vhm   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID V - 127
1vhm_A_1241vhm   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID D - 141
1vhm_A_1241vhm   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID D - 143
1zxq_*_631zxq   *     NAGN-ACETYL-D-GLUCOSAMINE N - 79
1zxq_*_631zxq   *     NAGN-ACETYL-D-GLUCOSAMINE S - 80
1zxq_*_631zxq   *     NAGN-ACETYL-D-GLUCOSAMINE N - 81

Clusters included in this Subclass
CLUSTER: HA.1.4
CLUSTER: HA.2.5
CLUSTER: HA.3.7