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Information on SUBCLASS 2.5.7
Subclass Accession number: 5409
Subclass: 2.5.7 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 18.8 +/- 15.9
Average RMSD (Å) : 0.700 +/- 0.200

Consensus geometry
d (Å): 7 delta (°): 135-180 theta (°): 90-135 rho (°): 45-90
Consensus Sequence: pXGXXX
(φψ)-conformation: aagpbp
Pattern: [LTV][AK]x[FL][E][KQR]x[G][FKL][AT]xx[GNV][LTV]x[GIP]
Conservation:-0.2180.175-0.6130.6901.8830.438-0.6132.474-0.7440.465-0.678-0.481-0.810-0.218-0.613-1.138
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1fw9_A_351fw9   A3550TKRFEQQGKTVSVTMIHHHHHTTT--EEEEEEaaaaaaavbxxbbbxa
1nm2_A_1451nm2   A149164VAHLERLGLTPANVNGHHHHHHTT-EEEEEEEaaaaaaagxbxabbae
1vhs_A_1251vhs   A128143LKLFEKHGFAEWGLFPHHHHHHTT-EEEEEEEaaaaaaavxbxabbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1fw9_A_351fw9   A     PHBP-HYDROXYBENZOIC ACID T - 35
1fw9_A_351fw9   A     PHBP-HYDROXYBENZOIC ACID F - 38
1fw9_A_351fw9   A     PHBP-HYDROXYBENZOIC ACID V - 47
1vhs_A_1251vhs   A     MSESELENOMETHIONINE K - 125
1vhs_A_1251vhs   A     MSESELENOMETHIONINE P - 126
1vhs_A_1251vhs   A     MSESELENOMETHIONINE F - 136
1vhs_A_1251vhs   A     MSESELENOMETHIONINE W - 139
1vhs_A_1251vhs   A     MSESELENOMETHIONINE A - 146

Clusters included in this Subclass
CLUSTER: HE.4.340