Information on SUBCLASS 2.5.8 |
Subclass Accession number: 5410
Subclass: 2.5.8 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: Conserved Annotation EC : 1.7 (>50 %) 1.7.2 (>50 %) 1.7.2.1 GO : GO:0005507 (>75 %) GO:0016661 (>50 %) GO:0016662 (>50 %) GO:0046914 (>75 %) GO:0050421 (>50 %) SCOP : 49502 (>75 %) 49503 (>75 %) 49550 (>75 %) |
Number of loops: 3 Average sequence ID (%) : 39.6 +/- 25.5 Average RMSD (Å) : 0.400 +/- 0.173 Consensus geometry
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Consensus Sequence: | pXGhXh |
(φψ)-conformation: | aagpbb |
Pattern: | [LV] | [IP] | [EW] | x | [FV] | [ET] | x | [G] | [AM] | [AN] | [AG] | x | [FI] | [KM] | [V] | x |
Conservation: | 0.194 | -0.862 | 0.013 | -0.316 | -0.117 | -0.185 | -0.961 | 2.899 | -0.415 | -0.638 | 0.557 | -0.042 | 0.120 | -0.185 | 1.348 | -1.410 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1j9q_A_308 | 1j9q | A | 308 | 323 | LIEAFELGAAAHFKVT | HHHHHTSS-EEEEEEE | aaaaaaagxbbbbbbx |
1nif_*_142 | 1nif | - | 142 | 157 | VPWHVTSGMNGAIMVL | HHHHHTTT-EEEEEEE | aaaaaaavxbbbbbbx |
1oe1_A_302 | 1oe1 | A | 302 | 317 | LIEAFELGAAGHIKVE | HHHHHTTS-EEEEEEE | aaaaaaagxbbbbxbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1j9q_A_308 | 1j9q | A | CUCOPPER (II) ION | L - 308 |
1j9q_A_308 | 1j9q | A | NO2NITRITE ION | L - 308 |
1j9q_A_308 | 1j9q | A | NO2NITRITE ION | F - 312 |
1nif_*_142 | 1nif | * | CUCOPPER (II) ION | H - 145 |
1nif_*_142 | 1nif | * | CUCOPPER (II) ION | M - 150 |
1oe1_A_302 | 1oe1 | A | PG4TETRAETHYLENE GLYCOL | A - 305 |
1oe1_A_302 | 1oe1 | A | PG4TETRAETHYLENE GLYCOL | F - 306 |
1oe1_A_302 | 1oe1 | A | PG4TETRAETHYLENE GLYCOL | A - 311 |
1oe1_A_302 | 1oe1 | A | PG4TETRAETHYLENE GLYCOL | G - 312 |
1oe1_A_302 | 1oe1 | A | PG4TETRAETHYLENE GLYCOL | H - 313 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1oe1_A_302 | 1oe1 | A | AC3PG4 BINDING SITE FOR CHAIN A | F - 306 |
1oe1_A_302 | 1oe1 | A | AC3PG4 BINDING SITE FOR CHAIN A | H - 313 |
Clusters included in this Subclass |
CLUSTER: HE.3.282 |