Information on SUBCLASS 2.5.9 |
Subclass Accession number: 5411
Subclass: 2.5.9 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 14.6 +/- 14.5 Average RMSD (Å) : 0.733 +/- 0.153 Consensus geometry
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Consensus Sequence: | XXGXXh |
(φψ)-conformation: | aagpbb |
Pattern: | [LMP] | [EGT] | [AR] | [LV] | x | [AEK] | [AFI] | [STV] | [ER] | x | x | [G] | [AGT] | [AIT] | [PV] | x |
Conservation: | -0.286 | -0.601 | 0.446 | 0.792 | -0.601 | -0.129 | -0.444 | -0.208 | 0.855 | -0.916 | -0.758 | 3.175 | -0.208 | -0.365 | 0.086 | -0.837 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1gef_A_59 | 1gef | A | 62 | 77 | MGRLIEFSRRFGGIPV | HHHHHHHHHHHT-EEE | aaaaaaaaaaagbxwb |
1qmh_A_50 | 1qmh | A | 53 | 68 | LTAVKAATEICGATVE | HHHHHHHHHHHT-EEE | aaaaaaaaaaalxbbb |
1r89_A_264 | 1r89 | A | 264 | 279 | PERLRKIVEERGTAVF | HHHHHHHHHHHT-EEE | aaaaaaaaaaavxxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1qmh_A_50 | 1qmh | A | CITCITRIC ACID | Q - 51 |
1qmh_A_50 | 1qmh | A | CITCITRIC ACID | H - 52 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1qmh_A_50 | 1qmh | A | RB1CITRATE BINDING SITE THAT IS INTERPRETED AS A PUTATIVE RNA BINDING SITE | Q - 51 |
Clusters included in this Subclass |
CLUSTER: HE.1.65 |