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Information on SUBCLASS 2.6.5
Subclass Accession number: 5418
Subclass: 2.6.5 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 17.5 +/- 25.0
Average RMSD (Å) : 0.700 +/- 0.200

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: pppcXp
(φψ)-conformation: aabpbb
Pattern: [AIK]x[dhr][ILVY]x[DENR][ETY][DNV]xx[CGSV][ILV]
Conservation:-0.672-0.789-1.2690.7860.0730.505-0.1240.517-0.1970.020-1.2212.372
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1fl2_A_2661fl2   A274285KVHVDEYDVDVIHHHHHTS-EEEEaaaaaabxbxxb
1g8m_A_3281g8m   A331342AKIISREVSDGVHHHHHTS-EEEEaaaaaabxbaeb
1htw_A_1001htw   A100111IRDYFNTDSICLHHHHHSSS-EEEaaaaaabxbbbb
1hyu_A_2661hyu   A274285KAHVSDYDVDVIHHHHHTS-EEEEaaaaaabxbxxb
1r1m_A_921r1m   A102113AQRLSRTNIQSVHHHHTTS-EEEEaaaaaabxxabb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1g8m_A_3281g8m   A     MSESELENOMETHIONINE R - 336
1g8m_A_3281g8m   A     MSESELENOMETHIONINE E - 337
1g8m_A_3281g8m   A     GGUANOSINE-5'-MONOPHOSPHATE E - 337
1g8m_A_3281g8m   A     MSESELENOMETHIONINE V - 343
1g8m_A_3281g8m   A     GGUANOSINE-5'-MONOPHOSPHATE V - 343
1htw_A_1001htw   A     MGMAGNESIUM ION E - 113
1htw_A_1001htw   A     ADPADENOSINE-5'-DIPHOSPHATE E - 113

Clusters included in this Subclass
CLUSTER: HE.3.163