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Information on SUBCLASS 2.7.4
Subclass Accession number: 5432
Subclass: 2.7.4 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0016301 (>75 %)  GO:0016772 (>75 %)  
Number of loops: 6

Average sequence ID (%) : 8.1 +/- 12.6
Average RMSD (Å) : 0.850 +/- 0.187

Consensus geometry
d (Å): 13 delta (°): 0-45 theta (°): 45-90 rho (°): 90-135
Consensus Sequence: pphXhp
(φψ)-conformation: aappbb
Pattern: x[adps][ilv]xx[akl][alt][CKNSY][dehk][IKLMV][dekp][fivy][DEQRTY][afkv]
Conservation:-1.182-0.8961.5730.224-1.162-0.7170.110-0.3700.9381.8980.2920.621-0.203-1.126
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1cke_A_571cke   A5871DALVPLASHLDVRFHHHHHHHHT--EEEaaaaaaaaapxbbb
1e2h_A_3331e2h   A338351DALLQLTSGMVQTHHHHHHHGGGS-EEEaaaaaaaaaxxxbx
1efv_B_1951efv   B195208LPNIMKAKKKKIEVHHHHHHTTTS-EEEaaaaaaaaaxxxxb
1fs7_A_2031fs7   A207220RSLVCAQCHVEYYFHHHHHHTTSS--EEaaaaaaaaabxbbx
1jlr_A_591jlr   A7285LLIEEALNELPFQKHHHHHHGGGS-EEEaaaaaaaaaxxbbx
1qo0_A_3081qo0   A309322EDVQRHLYDIDIDAHHHHHHHSS--EEEaaaaaaaaabxbxx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1fs7_A_2031fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 203
1fs7_A_2031fs7   A     CACALCIUM ION H - 203
1fs7_A_2031fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 206
1fs7_A_2031fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 207
1fs7_A_2031fs7   A     CACALCIUM ION R - 207
1fs7_A_2031fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 208
1fs7_A_2031fs7   A     CACALCIUM ION S - 208
1fs7_A_2031fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 210
1fs7_A_2031fs7   A     CACALCIUM ION V - 210
1fs7_A_2031fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE C - 211
1fs7_A_2031fs7   A     CACALCIUM ION C - 211
1fs7_A_2031fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 212
1fs7_A_2031fs7   A     CACALCIUM ION A - 212
1fs7_A_2031fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 213
1fs7_A_2031fs7   A     CACALCIUM ION Q - 213
1fs7_A_2031fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE C - 214
1fs7_A_2031fs7   A     CACALCIUM ION C - 214
1fs7_A_2031fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 215
1fs7_A_2031fs7   A     CACALCIUM ION H - 215
1fs7_A_2031fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 216
1fs7_A_2031fs7   A     CACALCIUM ION V - 216
1fs7_A_2031fs7   A     CACALCIUM ION E - 217
1fs7_A_2031fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 218
1fs7_A_2031fs7   A     CACALCIUM ION Y - 218
1fs7_A_2031fs7   A     CACALCIUM ION Y - 219
1fs7_A_2031fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 220
1fs7_A_2031fs7   A     CACALCIUM ION F - 220
1jlr_A_591jlr   A     GTPGUANOSINE-5'-TRIPHOSPHATE K - 59
1jlr_A_591jlr   A     GTPGUANOSINE-5'-TRIPHOSPHATE E - 60
1jlr_A_591jlr   A     GTPGUANOSINE-5'-TRIPHOSPHATE F - 64
1jlr_A_591jlr   A     GTPGUANOSINE-5'-TRIPHOSPHATE Y - 65
1jlr_A_591jlr   A     GTPGUANOSINE-5'-TRIPHOSPHATE R - 68
1jlr_A_591jlr   A     GTPGUANOSINE-5'-TRIPHOSPHATE E - 75
1jlr_A_591jlr   A     GTPGUANOSINE-5'-TRIPHOSPHATE L - 78
1jlr_A_591jlr   A     GTPGUANOSINE-5'-TRIPHOSPHATE L - 81
1jlr_A_591jlr   A     GTPGUANOSINE-5'-TRIPHOSPHATE P - 82
1jlr_A_591jlr   A     GTPGUANOSINE-5'-TRIPHOSPHATE F - 83

Clusters included in this Subclass
CLUSTER: HE.4.269
CLUSTER: HE.5.329
CLUSTER: HE.6.270