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Information on SUBCLASS 2.8.2
Subclass Accession number: 5439
Subclass: 2.8.2 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 6

Average sequence ID (%) : 20.0 +/- 26.3
Average RMSD (Å) : 0.633 +/- 0.216

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: pXGhhp
(φψ)-conformation: aaepbp
Pattern: xx[afkv][fil]x[aegkr][almv]x[aert][eknqt]x[g][aep]x[aekns]
Conservation:-0.594-0.389-0.6840.739-0.379-0.4730.257-0.552-0.240-0.056-0.7233.3330.039-0.056-0.223
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a9x_B_16151a9x   B16151629TRKLTRLLREKGAQNHHHHHHHHHHH--EEaaaaaaaaaaaepbx
1cs8_A_1191cs8   A119133EKALMKAVATVGPISHHHHHHHHHHH--EEaaaaaaaaaaaepbx
1gq6_A_1241gq6   A125139VAALRAVAEQHGPLAHHHHHHHHHHHSSEEaaaaaaaaaaaewbx
1jmt_A_641jmt   A8397EEVFTEMEEKYGEVEHHHHHHHHHHT--EEaaaaaaaaaaaexxa
1ldd_A_7751ldd   A782796LPFIEGMLTNLGAMKHHHHHHHHHHH-SEEaaaaaaaaaaaepbx
1mhw_A_1191mhw   A119133EKALMKAVATVGPISHHHHHHHHHHT-SEEaaaaaaaaaaaepbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gq6_A_1241gq6   A     MNMANGANESE (II) ION H - 142
1gq6_A_1241gq6   A     MNMANGANESE (II) ION L - 143
1jmt_A_641jmt   A     HEZHEXANE-1,6-DIOL E - 88
1jmt_A_641jmt   A     HEZHEXANE-1,6-DIOL K - 92
1jmt_A_641jmt   A     HEZHEXANE-1,6-DIOL Y - 93

Clusters included in this Subclass
CLUSTER: HE.3.100