Logo
Information on SUBCLASS 2.8.5
Subclass Accession number: 5442
Subclass: 2.8.5 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 11.9 +/- 12.0
Average RMSD (Å) : 0.567 +/- 0.153

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: XhGpXX
(φψ)-conformation: aaepbb
Pattern: [FKV][KN]x[AIV][FKR][EKQ][FTV][FL][G][DEH][AGS]x[FVY][LVW]
Conservation:-1.1290.622-0.975-0.128-0.7440.412-0.6670.7552.7990.257-0.128-0.6670.103-0.513
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b74_A_1851b74   A185198KKEIKKFLGDAEVVHHHHHHHH-S-EEEaaaaaaaaexbxxx
1c3p_A_2721c3p   A279292FNIVREVFGEGVYLHHHHHHHH-S-EEEaaaaaaaaexbxbb
1j34_B_2451j34   B252265VKLAFQTFGHSIFWHHHHHHHH-S-EEEaaaaaaaaexbbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1j34_B_2451j34   B     CACALCIUM ION E - 247
1j34_B_2451j34   B     CGUGAMMA-CARBOXY-GLUTAMIC ACID H - 261
1j34_B_2451j34   B     CGUGAMMA-CARBOXY-GLUTAMIC ACID S - 262
1j34_B_2451j34   B     CGUGAMMA-CARBOXY-GLUTAMIC ACID I - 263
1j34_B_2451j34   B     CACALCIUM ION I - 263

Clusters included in this Subclass
CLUSTER: HE.2.138