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Information on SUBCLASS 2.11.1
Subclass Accession number: 5447
Subclass: 2.11.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 6

Average sequence ID (%) : 60.0 +/- 21.3
Average RMSD (Å) : 0.367 +/- 0.052

Consensus geometry
d (Å): 13 delta (°): 0-45 theta (°): 45-90 rho (°): 90-135
Consensus Sequence: HThGpX
(φψ)-conformation: aabebb
Pattern: [dst][KNQRST][DE][ILV][V][A][L][s][G][AG][H][T][FIL][G][AKQR][ANST]
Conservation:-1.337-1.1650.243-0.3390.2900.2900.290-0.6881.242-0.4702.1930.766-0.6371.242-0.890-1.029
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1gwu_A_1601gwu   A160175SSDLVALSGGHTFGKNHHHHHHHHGGGGS-EEaaaaaaaaaaaabebb
1iyn_A_1531iyn   A153168DKEIVALSGAHTLGRSHHHHHHHHGGGGS-EEaaaaaaaaaaaabebb
1jdr_A_1651jdr   A165180DREVVALMGAHTLGKTHHHHHHHHGGGGSSEEaaaaaaaaaaaabebx
1oaf_A_1531oaf   A153168DQDIVALSGGHTIGAAHHHHHHHHGGGGS-EEaaaaaaaaaaaabebx
1pa2_A_1591pa2   A159174TNDLVALSGAHTFGRAHHHHHHHHGGGGSSEEaaaaaaaaaaaabebb
1qgj_A_1551qgj   A155170ITDVVALSGAHTFGQAHHHHHHHHGGGGSSEEaaaaaaaaaaaabebb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gwu_A_1601gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 163
1gwu_A_1601gwu   A     CACALCIUM ION L - 163
1gwu_A_1601gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 166
1gwu_A_1601gwu   A     CACALCIUM ION L - 166
1gwu_A_1601gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 167
1gwu_A_1601gwu   A     CACALCIUM ION S - 167
1gwu_A_1601gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 168
1gwu_A_1601gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 169
1gwu_A_1601gwu   A     CACALCIUM ION G - 169
1gwu_A_1601gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 170
1gwu_A_1601gwu   A     CACALCIUM ION H - 170
1gwu_A_1601gwu   A     ACTACETATE ION H - 170
1gwu_A_1601gwu   A     CACALCIUM ION T - 171
1gwu_A_1601gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 172
1gwu_A_1601gwu   A     CACALCIUM ION F - 172
1gwu_A_1601gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 173
1gwu_A_1601gwu   A     CACALCIUM ION G - 173
1gwu_A_1601gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 174
1gwu_A_1601gwu   A     CACALCIUM ION K - 174
1gwu_A_1601gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE N - 175
1gwu_A_1601gwu   A     CACALCIUM ION N - 175
1gwu_A_1601gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 176
1gwu_A_1601gwu   A     CACALCIUM ION Q - 176
1iyn_A_1531iyn   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 156
1iyn_A_1531iyn   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 158
1iyn_A_1531iyn   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 159
1iyn_A_1531iyn   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 160
1iyn_A_1531iyn   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 162
1iyn_A_1531iyn   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 163
1iyn_A_1531iyn   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 165
1iyn_A_1531iyn   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 166
1iyn_A_1531iyn   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 167
1iyn_A_1531iyn   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 168
1jdr_A_1651jdr   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 168
1jdr_A_1651jdr   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 171
1jdr_A_1651jdr   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 172
1jdr_A_1651jdr   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 174
1jdr_A_1651jdr   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 175
1jdr_A_1651jdr   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 177
1jdr_A_1651jdr   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 178
1jdr_A_1651jdr   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 179
1jdr_A_1651jdr   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 180
1oaf_A_1531oaf   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 161
1oaf_A_1531oaf   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 162
1oaf_A_1531oaf   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 165
1oaf_A_1531oaf   A     ASCASCORBIC ACID G - 166
1oaf_A_1531oaf   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 167
1oaf_A_1531oaf   A     ASCASCORBIC ACID A - 167
1oaf_A_1531oaf   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 168
1pa2_A_1591pa2   A     CACALCIUM ION L - 162
1pa2_A_1591pa2   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 162
1pa2_A_1591pa2   A     CACALCIUM ION L - 165
1pa2_A_1591pa2   A     CACALCIUM ION S - 166
1pa2_A_1591pa2   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 166
1pa2_A_1591pa2   A     CACALCIUM ION A - 168
1pa2_A_1591pa2   A     CACALCIUM ION H - 169
1pa2_A_1591pa2   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 169
1pa2_A_1591pa2   A     CACALCIUM ION T - 170
1pa2_A_1591pa2   A     CACALCIUM ION F - 171
1pa2_A_1591pa2   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 171
1pa2_A_1591pa2   A     CACALCIUM ION G - 172
1pa2_A_1591pa2   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 172
1pa2_A_1591pa2   A     CACALCIUM ION R - 173
1pa2_A_1591pa2   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 173
1pa2_A_1591pa2   A     CACALCIUM ION A - 174
1pa2_A_1591pa2   A     CACALCIUM ION R - 175
1pa2_A_1591pa2   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 175
1qgj_A_1551qgj   A     CACALCIUM ION T - 156
1qgj_A_1551qgj   A     GSHGLUTHATHIONE T - 156
1qgj_A_1551qgj   A     CACALCIUM ION D - 157
1qgj_A_1551qgj   A     GSHGLUTHATHIONE D - 157
1qgj_A_1551qgj   A     CACALCIUM ION V - 158
1qgj_A_1551qgj   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 158
1qgj_A_1551qgj   A     CACALCIUM ION L - 161
1qgj_A_1551qgj   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 161
1qgj_A_1551qgj   A     CACALCIUM ION S - 162
1qgj_A_1551qgj   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 162
1qgj_A_1551qgj   A     CACALCIUM ION A - 164
1qgj_A_1551qgj   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 164
1qgj_A_1551qgj   A     CACALCIUM ION H - 165
1qgj_A_1551qgj   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 165
1qgj_A_1551qgj   A     CACALCIUM ION T - 166
1qgj_A_1551qgj   A     CACALCIUM ION F - 167
1qgj_A_1551qgj   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 167
1qgj_A_1551qgj   A     CACALCIUM ION G - 168
1qgj_A_1551qgj   A     CACALCIUM ION Q - 169
1qgj_A_1551qgj   A     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 169
1qgj_A_1551qgj   A     CACALCIUM ION A - 170
1qgj_A_1551qgj   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 170
1qgj_A_1551qgj   A     CACALCIUM ION K - 171
1qgj_A_1551qgj   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 171
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gwu_A_1601gwu   A CA2CA BINDING SITE FOR CHAIN AT - 171
1oaf_A_1531oaf   A AC1HEM BINDING SITE FOR CHAIN AL - 159
1oaf_A_1531oaf   A AC1HEM BINDING SITE FOR CHAIN AH - 163
1oaf_A_1531oaf   A AC2NA BINDING SITE FOR CHAIN AT - 164
1oaf_A_1531oaf   A AC1HEM BINDING SITE FOR CHAIN AI - 165
1oaf_A_1531oaf   A AC1HEM BINDING SITE FOR CHAIN AA - 168

Clusters included in this Subclass
CLUSTER: HE.5.135