ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.4.6

Subclass Accession number: 545
Subclass: 2.4.6

PSSM

Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 9

Average sequence ID (%) : 14.1 +/- 14.9
Average RMSD (Å) : 0.389 +/- 0.145

Consensus geometry

d (Å): 11

delta (°): 90-135

theta (°): 90-135

rho (°): 315-360

Consensus Sequence:	hXpGpX
(φψ)-conformation:	bbllbp

Pattern:	x	[iltvw]	x	x	[egknqs]	[DGN]	[eqrt]	[ikltv]	[ailtv]	[adg]	x	x
Conservation:	-0.845	-0.117	-0.390	-0.423	0.377	2.769	0.365	-0.215	0.387	-0.027	-1.060	-0.822

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bia_*_176	1bia	-	176	187	DLYLQDRKLAGI	EEEETTEEEEEE	bbbblvbxabbb
1bol_A_179	1bol	A	180	191	IDCSSGTLSDVA	EEEETTEEEEEE	bbbblvbxabbb
1ci9_A_37	1ci9	A	41	52	IVARHGEILYRR	EEEETTEEEEEE	bbbblvbxabbb
1cjw_A_81	1cjw	A	83	94	GWFVEGRLVAFI	EEEETTEEEEEE	bbbblvbxabbb
1h7w_A_391	1h7w	A	396	407	VIVKGGRIVAVQ	EEEETTEEEEEE	bxbblvbxabbb
1jke_A_2	1jke	A	12	23	SVTVEGEVTGEI	EEEETTEEEEEE	bbbbvvxxabbb
1kmt_A_123	1kmt	A	131	142	HTYRKGVKIDKT	EEEETTEEEEEE	bbbblvbxabbb
1oxc_A_13	1oxc	A	29	40	NVLVNNETAATF	EEEETTEEEEEE	bbbblvbxabbb
1ut7_A_93	1ut7	A	103	114	IISTEGQRVGIK	EEEETTEEEEEE	xbbblvbxabbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1jke_A_2	1jke	A	ZNZINC ION	E - 16
1jke_A_2	1jke	A	ZNZINC ION	E - 18
1oxc_A_13	1oxc	A	FUCFUCOSE	N - 21
1oxc_A_13	1oxc	A	CACALCIUM ION	N - 21
1oxc_A_13	1oxc	A	FUCFUCOSE	S - 22
1oxc_A_13	1oxc	A	CACALCIUM ION	S - 22
1oxc_A_13	1oxc	A	FUCFUCOSE	S - 23
1oxc_A_13	1oxc	A	FUCFUCOSE	G - 24
1oxc_A_13	1oxc	A	FUCFUCOSE	Q - 26
1oxc_A_13	1oxc	A	FUCFUCOSE	T - 45
1ut7_A_93	1ut7	A	AUGOLD ION	T - 106
1ut7_A_93	1ut7	A	AUGOLD ION	V - 111

Clusters included in this Subclass

CLUSTER: HA.3.52