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Information on SUBCLASS 3.1.2
Subclass Accession number: 5451
Subclass: 3.1.2 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 52

Average sequence ID (%) : 13.6 +/- 15.9
Average RMSD (Å) : 0.862 +/- 0.221

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: XXchpXh
(φψ)-conformation: aagpabb
Pattern: [acfgiklmtv][adegkqrs]xx[adegknqrs][acfgilpvy][dehknprst]x[acfgilmptv][afgilmptv]xx
Conservation:-0.1250.159-0.421-0.5042.275-0.2291.039-1.207-1.0510.605-0.541-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a6q_*_2641a6q   -275286CLYKGSRDNMSVHHHTT--S-EEEaaaagxabxbbb
1az9_*_941az9   -99109PEKLGVDRALA.HHHHT-SEEEE.aaaavbabbbx.
1bvu_A_791bvu   A93104TAVMDLPYGGGKHHHHT-S-EEEEaaaavxabbbbb
1ccw_B_2261ccw   B240251AAEQGVKNITVGHHHTT--EEEEEaaaagxabbbxb
1cdo_A_2301cdo   A233242AKVFGATDFV..HHHTT--EEE..aaaagxabbb..
1d1t_A_2291d1t   A232241AMAVGATECI..HHHHT-SEEE..aaaaNpabbb..
1doz_A_1961doz   A208219AEGAGVSEYAVGHHHHT---EEEEaaaavxabbbbb
1dy2_A_1011dy2   A109120ARAAGLLSTFRAHHHTT--S-EEEaaaavxaxxbbx
1e3i_A_2331e3i   A236245AKALGATDCL..HHHTT-SEEE..aaaagxabbb..
1e3j_A_2021e3j   A208218AKNCGADVTLV.HHHTT-SEEEE.aaaagpabbbx.
1e6u_A_2531e6u   A261272AKVVGYKGRVVFHHHHT--SEEEEaaaavxaxbxbb
1euc_B_3341euc   B343354CRELELKVPLVVHHHHT--S-EEEaaaalxaxxbbb
1euz_A_801euz   A94105VAVVDLPYGGGKHHHTT-S-EEEEaaaalxabbbbb
1f3v_A_941f3v   A104115AAALAQHSVPLQHHHTT-S---EEaaaalbabbwbb
1f8f_A_2011f8f   A210221AKVCGASIIIAVHHHHT-SEEEEEaaaagpabbbbb
1gmx_A_701gmx   A7889LLQQGYDVVYSIHHHHT-SSEEEEaaaagxabbbbx
1gxj_A_6231gxj   A630641KKKYRLNTRIATHHHHT--S-EEEaaaalxabxbbb
1h72_C_631h72   C7283IDDFNIGKGVKIHHHTT---EEEEaaaalxabbbbb
1hey_*_211hey   -2536LKELGFNNVEDAHHHHT---EEEEaaaagxaxbbbb
1ht0_A_2291ht0   A232241AKELGATECI..HHHHT-SEEE..aaaagxabbb..
1i39_A_781i39   A90101ILRLKPEIAYVDHHHH--SEEEEEaaaalxabbbbx
1im8_A_2101im8   A217225LKNVGFSQV...HHHHT-SEE...aaaagpabb...
1j20_A_411j20   A4859ALRTGASKAIALHHHHT-SEEEEEaaaagxabbbbb
1j3w_A_111j3w   A2435LRETGARYALLIHHHH--SEEEEEaaaavxabbbbb
1j97_A_1031j97   A110121KEKLGLDYAFANHHHHT-SEEEEEaaaavxabbbbx
1jbe_A_151jbe   A2536LKELGFNNVEEAHHHTT---EEEEaaaavbaxbbbb
1jl5_A_10581jl5   A10681077CLDRQAHELE..HHHHT-SEEE..aaaalpabbb..
1k75_A_1461k75   A149160ASIAGCKKVVLCHHHHT-SEEEEEaaaavxabbbbb
1k92_A_541k92   A5970AMEYGAENARLIHHHHT-SEEEEEaaaagxabbbbx
1khd_A_2121khd   A219230LKVLGYKNAAVVHHHTT-SEEEEEaaaavxabbbbb
1koe_*_1561koe   -168179ARAVGLSGTFRAHHHTT--S-EEEaaaavxaxxbbx
1llu_A_2041llu   A210220ARKLGASLTVN.HHHTT-SEEEE.aaaagxabbbx.
1m3k_A_3531m3k   A365376MKRRGARKGLATHHHHT-SEEEEEaaaavxabbbbb
1mu5_A_3191mu5   A327338KKIFNPDFAASIHHHH--SEEEEEaaaalxabbbbb
1nmo_A_1791nmo   A182192AARFGVDAFIT.HHHH--SEEEE.aaaaSbabbbb.
1nn4_A_901nn4   A97108RQHNDTNVLAFGHHHH---EEEEEaaaalxabbbbb
1np6_A_601np6   A6071LRKAGAAQTIVAHHHHT-SEEEEEaaaagxabbbbb
1npi_A_221npi   A2738CGIKKGSSGYCAHHHTT-SEEEEEaaaavxabbbxx
1nth_A_2711nth   A286296VLMSSASWHLD.HHHS--SEEEE.aaaalxabbbx.
1nxo_A_341nxo   A4152FEAEQPDIIILDHHHH--SEEEEEaaaalxabbxbb
1ono_A_391ono   A4656CLEFSPRYAVM.HHHH--SEEEE.aaaalxabbbb.
1q7z_A_2581q7z   A261269YYELGVNIF...HHHTT-SEE...aaaavxabb...
1qme_A_2671qme   A281292QEKVKGKYMTATHHHH--SEEEEEaaaalxabbbbb
1qs0_B_2311qs0   B239250AEESGVDAEVIDHHHH----EEEEaaaagpaxxxbx
1rjw_A_1981rjw   A204213AKELGADLVV..HHHTT-SEEE..aaaagpabbb..
1st9_A_1061st9   A113124MKSYGVNFPVVLHHHTT--S-EEEaaaavxabwbbb
1tmy_*_361tmy   -4354YKELKPDIVTMDHHHH--SEEEEEaaaalxabbbbx
1v93_A_1851v93   A195206ARRAGIGIPILPHHHTT--S-EEEaaaavxaxwbxx
1vj1_A_1711vj1   A175186GHLLGCSRVVGIHHHTT-S--EEEaaaagxabbbxb
1vjn_A_1421vjn   A149158ADLLNAKVII..HHHTT-SEEE..aaaalxaxbb..
2dnj_A_1402dnj   A155166QQKWHLNDVMLMHHHH----EEEEaaaalbaxbbbb
2scu_B_3252scu   B336347VAEVGVNVPVVVHHHHT--S-EEEaaaavxabpbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a6q_*_2641a6q   *     MNMANGANESE (II) ION D - 282
1a6q_*_2641a6q   *     PO4PHOSPHATE ION D - 282
1a6q_*_2641a6q   *     MNMANGANESE (II) ION N - 283
1d1t_A_2291d1t   A     CACCACODYLATE ION M - 233
1d1t_A_2291d1t   A     CACCACODYLATE ION A - 234
1d1t_A_2291d1t   A     CACCACODYLATE ION V - 235
1d1t_A_2291d1t   A     CACCACODYLATE ION G - 236
1d1t_A_2291d1t   A     CACCACODYLATE ION A - 237
1d1t_A_2291d1t   A     CACCACODYLATE ION T - 238
1doz_A_1961doz   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED Q - 199
1doz_A_1961doz   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED Q - 221
1e3j_A_2021e3j   A     PO4PHOSPHATE ION R - 204
1euc_B_3341euc   B     CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE I - 334
1euc_B_3341euc   B     CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE I - 335
1euc_B_3341euc   B     CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE A - 336
1euc_B_3341euc   B     CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE N - 337
1euc_B_3341euc   B     CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE L - 356
1euc_B_3341euc   B     CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE E - 357
1f8f_A_2011f8f   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 201
1f8f_A_2011f8f   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 202
1f8f_A_2011f8f   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 203
1f8f_A_2011f8f   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 221
1f8f_A_2011f8f   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE D - 222
1gmx_A_701gmx   A     CSSS-MERCAPTOCYSTEINE S - 70
1gmx_A_701gmx   A     CSSS-MERCAPTOCYSTEINE S - 71
1gmx_A_701gmx   A     CSSS-MERCAPTOCYSTEINE K - 72
1gmx_A_701gmx   A     EDO1,2-ETHANEDIOL K - 72
1gmx_A_701gmx   A     EDO1,2-ETHANEDIOL G - 73
1gmx_A_701gmx   A     EDO1,2-ETHANEDIOL A - 74
1gmx_A_701gmx   A     EDO1,2-ETHANEDIOL A - 75
1gmx_A_701gmx   A     EDO1,2-ETHANEDIOL Q - 76
1gmx_A_701gmx   A     EDO1,2-ETHANEDIOL Y - 77
1gmx_A_701gmx   A     EDO1,2-ETHANEDIOL L - 78
1gmx_A_701gmx   A     EDO1,2-ETHANEDIOL L - 79
1gmx_A_701gmx   A     EDO1,2-ETHANEDIOL Q - 80
1gmx_A_701gmx   A     EDO1,2-ETHANEDIOL Q - 81
1gmx_A_701gmx   A     EDO1,2-ETHANEDIOL Y - 83
1gmx_A_701gmx   A     EDO1,2-ETHANEDIOL D - 84
1gmx_A_701gmx   A     EDO1,2-ETHANEDIOL V - 85
1gmx_A_701gmx   A     EDO1,2-ETHANEDIOL V - 86
1gmx_A_701gmx   A     EDO1,2-ETHANEDIOL Y - 87
1gmx_A_701gmx   A     CSSS-MERCAPTOCYSTEINE I - 89
1h72_C_631h72   C     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER V - 63
1h72_C_631h72   C     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER A - 64
1h72_C_631h72   C     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER I - 85
1im8_A_2101im8   A     MSESELENOMETHIONINE I - 210
1im8_A_2101im8   A     MSESELENOMETHIONINE H - 213
1im8_A_2101im8   A     MSESELENOMETHIONINE K - 214
1im8_A_2101im8   A     MSESELENOMETHIONINE L - 217
1im8_A_2101im8   A     MSESELENOMETHIONINE V - 225
1j20_A_411j20   A     AMPADENOSINE MONOPHOSPHATE V - 41
1jbe_A_151jbe   A     GOLGLYCEROL S - 15
1jbe_A_151jbe   A     GOLGLYCEROL T - 16
1jbe_A_151jbe   A     GOLGLYCEROL M - 17
1jbe_A_151jbe   A     GOLGLYCEROL R - 18
1jl5_A_10581jl5   A     CACALCIUM ION E - 1059
1k75_A_1461k75   A     MSESELENOMETHIONINE A - 146
1k75_A_1461k75   A     MSESELENOMETHIONINE T - 147
1k75_A_1461k75   A     MSESELENOMETHIONINE P - 148
1llu_A_2041llu   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE K - 206
1nmo_A_1791nmo   A     MSESELENOMETHIONINE D - 180
1nth_A_2711nth   A     BGX4-METHYL-PYRROLINE-5-CARBOXYLIC ACID L - 295
1qs0_B_2311qs0   B     MSESELENOMETHIONINE V - 244
1qs0_B_2311qs0   B     MSESELENOMETHIONINE D - 245
1qs0_B_2311qs0   B     MSESELENOMETHIONINE D - 250
1v93_A_1851v93   A     DOXDIOXANE R - 194
1v93_A_1851v93   A     DOXDIOXANE R - 197
1v93_A_1851v93   A     DOXDIOXANE A - 198
1v93_A_1851v93   A     DOXDIOXANE G - 199
1vj1_A_1711vj1   A     MSESELENOMETHIONINE A - 171
1vj1_A_1711vj1   A     MSESELENOMETHIONINE I - 174
1vj1_A_1711vj1   A     MSESELENOMETHIONINE G - 175
1vj1_A_1711vj1   A     MSESELENOMETHIONINE H - 176
1vj1_A_1711vj1   A     MSESELENOMETHIONINE C - 180
1vj1_A_1711vj1   A     MSESELENOMETHIONINE R - 182
1vj1_A_1711vj1   A     MSESELENOMETHIONINE V - 183
1vj1_A_1711vj1   A     MSESELENOMETHIONINE V - 184
1vj1_A_1711vj1   A     MSESELENOMETHIONINE G - 185
1vjn_A_1421vjn   A     MSESELENOMETHIONINE I - 158
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1a6q_*_2641a6q   * MN2MN 2+ BINDING SITES.D - 282
1e6u_A_2531e6u   A AC2UVW BINDING SITE FOR CHAIN AK - 262
1h72_C_631h72   C TRSTRS BINDING SITE FOR CHAIN CD - 73
1h72_C_631h72   C TRSTRS BINDING SITE FOR CHAIN CN - 76
1tmy_*_361tmy   * ACTACTIVE SITE AND METAL BINDING SITE.D - 54

Clusters included in this Subclass
CLUSTER: HE.3.60
CLUSTER: HE.3.67
CLUSTER: HE.4.175
CLUSTER: HE.4.21
CLUSTER: HE.5.38
CLUSTER: HE.5.74
CLUSTER: HE.6.111
CLUSTER: HE.7.57