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Information on SUBCLASS 3.1.4
Subclass Accession number: 5453
Subclass: 3.1.4 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 38

Average sequence ID (%) : 16.1 +/- 17.5
Average RMSD (Å) : 0.734 +/- 0.192

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXGhpXh
(φψ)-conformation: aagpabb
Pattern: xx[acfglmpv]x[adekrst]x[DEGK][acfgilpvy][adegkqrst][adegknrst][acfgilpvy]x
Conservation:-0.391-0.459-0.177-0.487-0.114-0.3693.124-0.4530.040-0.456-0.045-0.214
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aho_*_191aho   -2435EECTKLKGESGYHHHHHTT-SEEEaaaaaavxabbb
1b74_A_441b74   A5667GFLKDKGVDIIVHHHHTTT-SEEEaaaaaavxabbb
1b9h_A_391b9h   A4657EFAAHHGAAHALHHHHHTT-SEEEaaaaaalxabbb
1bs0_A_841bs0   A92103ELAEWLGYSRALHHHHHHT-SEEEaaaaaavbabbb
1ccw_A_1011ccw   A106116KRFKDMGYDRV.HHHHHTT-SEE.aaaaaagxabb.
1ccw_B_2261ccw   B238249LLAAEQGVKNITHHHHHTT--EEEaaaaaagxabbb
1dc5_A_1021dc5   A106117RKHITAGAKKVVHHHHHTT-SEEEaaaaaagxabbb
1djt_A_191djt   A2435DLCTKNGAKSGYHHHHHTT-SEEEaaaaaavxabbb
1dq7_A_191dq7   A2435ALCTDKKGDSGAHHHHHTT-SEEEaaaaaavxabbb
1e5e_A_621e5e   A7081KIAFLEKTEACVHHHHHHT-SEEEaaaaaalbabbb
1e8c_A_511e8c   A5263PQAIAQGVAAIIHHHHHTT-SEEEaaaaaavxabbb
1f1e_A_1021f1e   A125135EYADEDGRKTV.HHHHHTT-SEE.aaaaaalbabx.
1fp2_A_3211fp2   A326337KLFIEAGFQHYKHHHHHTT--EEEaaaaaavxabbb
1g2a_A_251g2a   A3647ETMYAEEGIGLAHHHHHTT-SEEEaaaaaalbabbb
1gpj_A_291gpj   A3243DIVESFGLSGSVHHHHHHT-SEEEaaaaaalxabbb
1gsa_*_2491gsa   -260271PTLKEKGLIFVGHHHHHTT--EEEaaaaaavxabbb
1iz0_A_1641iz0   A164175ALPLALGAEEAAHHHHHTT-SEEEaaaaaagxabbb
1j93_A_1801j93   A199210RYQADSGAQAVQHHHHHTT-SEEEaaaaaagxabbx
1jce_A_1081jce   A116127DAGLEAGASKVFHHHHHTT-SEEEaaaaaagxabbb
1jxh_A_1551jxh   A163174RALLAMGCEAVLHHHHHTT-SEEEaaaaaagxabbb
1k92_A_541k92   A5768RRAMEYGAENARHHHHHHT-SEEEaaaaaagxabbb
1kv0_A_191kv0   A2435NLCTKDGAKIGYHHHHHTT-SEEEaaaaaavxabbb
1lhp_A_1651lhp   A173184DMLHSMGPDTVVHHHHHHS-SEEEaaaaaaIpabbb
1lme_A_241lme   A3546ETMYHYDGVGLAHHHHHTT-SEEEaaaaaavxabbb
1m6s_A_341m6s   A4253LAAETFGKEAALHHHHHTT-SEEEaaaaaavbabbb
1m7x_A_2651m7x   A274285PYAKWMGFTHLEHHHHHTT-SEEEaaaaaavxabbb
1ny5_A_841ny5   A8899VEAMKMGAYDFLHHHHTTT--EEEaaaaaagxabbb
1pv9_A_1571pv9   A166176YLMKMNGAEKP.HHHHHTT-SEE.aaaaaagxabx.
1qgv_A_1091qgv   A120131YRGARKGRGLVVHHHHTTT-SEEEaaaaaagxabbb
1qz5_A_1371qz5   A140151LSLYASGRTTGIHHHHHTT-SSEEaaaaaavbabeb
1r3s_A_1851r3s   A204215VGQVVAGAQALQHHHHHTT-SEEEaaaaaagpabbb
1rkd_*_2021rkd   -210221QVLHEKGIRTVLHHHHHTT-SEEEaaaaaagxabbb
1rl4_A_871rl4   A98109DIMYESKGIGLSHHHHHTT-SEEEaaaaaalxabbb
1sn4_A_191sn4   A2435KLCTDNGAESGYHHHHHTT-SEEEaaaaaavxabbb
1snb_*_191snb   -2435DVCTENGAKSGYHHHHHTT-SEEEaaaaaavxabeb
1uuf_A_2111uuf   A212223EAAKALGADEVVHHHHHHT-SEEEaaaaaagxabbb
1yag_A_1371yag   A140151LSLYSSGRTTGIHHHHHTT-SSEEaaaaaavbabeb
7req_B_5717req   B583594KALKAAGAKALYHHHHHTT-SEEEaaaaaagpabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e5e_A_621e5e   A     GOLGLYCEROL V - 64
1e5e_A_621e5e   A     GOLGLYCEROL E - 68
1e5e_A_621e5e   A     GOLGLYCEROL V - 81
1e5e_A_621e5e   A     GOLGLYCEROL A - 82
1e5e_A_621e5e   A     GOLGLYCEROL T - 83
1e8c_A_511e8c   A     MSESELENOMETHIONINE I - 51
1e8c_A_511e8c   A     MSESELENOMETHIONINE P - 52
1e8c_A_511e8c   A     UAGURIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE-D-GLUTAMATE Q - 53
1e8c_A_511e8c   A     MSESELENOMETHIONINE I - 55
1e8c_A_511e8c   A     MSESELENOMETHIONINE I - 63
1f1e_A_1021f1e   A     MSESELENOMETHIONINE D - 103
1f1e_A_1021f1e   A     MSESELENOMETHIONINE A - 104
1f1e_A_1021f1e   A     MSESELENOMETHIONINE Y - 108
1f1e_A_1021f1e   A     MSESELENOMETHIONINE L - 111
1f1e_A_1021f1e   A     MSESELENOMETHIONINE I - 112
1f1e_A_1021f1e   A     MSESELENOMETHIONINE C - 113
1f1e_A_1021f1e   A     MSESELENOMETHIONINE A - 115
1f1e_A_1021f1e   A     MSESELENOMETHIONINE T - 116
1f1e_A_1021f1e   A     MSESELENOMETHIONINE E - 118
1f1e_A_1021f1e   A     MSESELENOMETHIONINE L - 119
1g2a_A_251g2a   A     BB2ACTINONIN E - 41
1g2a_A_251g2a   A     BB2ACTINONIN E - 42
1g2a_A_251g2a   A     BB2ACTINONIN G - 43
1g2a_A_251g2a   A     BB2ACTINONIN I - 44
1g2a_A_251g2a   A     BB2ACTINONIN G - 45
1g2a_A_251g2a   A     BB2ACTINONIN L - 46
1g2a_A_251g2a   A     BB2ACTINONIN A - 47
1gpj_A_291gpj   A     GMC(2R,3R,4S,5S)-4-AMINO-2-[6-(DIMETHYLAMINO)-9H-PURIN-9-YL]-5-(HYDROXYMETHYL)TETRAHYDRO-3-FURANOL T - 47
1gpj_A_291gpj   A     GLUGLUTAMIC ACID T - 47
1gsa_*_2491gsa   *     ADPADENOSINE-5'-DIPHOSPHATE D - 273
1gsa_*_2491gsa   *     MGMAGNESIUM ION D - 273
1gsa_*_2491gsa   *     ADPADENOSINE-5'-DIPHOSPHATE I - 275
1jce_A_1081jce   A     MSESELENOMETHIONINE I - 114
1jce_A_1081jce   A     MSESELENOMETHIONINE I - 129
1jce_A_1081jce   A     MSESELENOMETHIONINE E - 130
1lme_A_241lme   A     OCSCYSTEINESULFONIC ACID G - 44
1qz5_A_1371qz5   A     CACALCIUM ION Q - 137
1qz5_A_1371qz5   A     ATPADENOSINE-5'-TRIPHOSPHATE Q - 137
1qz5_A_1371qz5   A     KABKABIRAMIDE C V - 139
1qz5_A_1371qz5   A     KABKABIRAMIDE C L - 140
1qz5_A_1371qz5   A     KABKABIRAMIDE C L - 142
1qz5_A_1371qz5   A     KABKABIRAMIDE C Y - 143
1qz5_A_1371qz5   A     KABKABIRAMIDE C A - 144
1qz5_A_1371qz5   A     KABKABIRAMIDE C S - 145
1qz5_A_1371qz5   A     KABKABIRAMIDE C G - 146
1qz5_A_1371qz5   A     KABKABIRAMIDE C R - 147
1qz5_A_1371qz5   A     KABKABIRAMIDE C T - 148
1qz5_A_1371qz5   A     CACALCIUM ION D - 154
1qz5_A_1371qz5   A     ATPADENOSINE-5'-TRIPHOSPHATE D - 154
1qz5_A_1371qz5   A     ATPADENOSINE-5'-TRIPHOSPHATE S - 155
1r3s_A_1851r3s   A     1CPCOPROPORPHYRIN I Q - 215
1r3s_A_1851r3s   A     1CPCOPROPORPHYRIN I F - 217
1r3s_A_1851r3s   A     1CPCOPROPORPHYRIN I E - 218
1rkd_*_2021rkd   *     ADPADENOSINE-5'-DIPHOSPHATE T - 223
1rl4_A_871rl4   A     BRR(2R)-2-{[FORMYL(HYDROXY)AMINO]METHYL}HEXANOIC ACID K - 104
1rl4_A_871rl4   A     BRR(2R)-2-{[FORMYL(HYDROXY)AMINO]METHYL}HEXANOIC ACID G - 105
1rl4_A_871rl4   A     BRR(2R)-2-{[FORMYL(HYDROXY)AMINO]METHYL}HEXANOIC ACID I - 106
1rl4_A_871rl4   A     BL52-{N'-[2-(5-AMINO-1-PHENYLCARBAMOYL-PENTYLCARBAMOYL)-HEXYL]-HYDRAZINOMETHYL}-HEXANOIC ACID(5-AMINO-1-PHENYLCARBAMOYL-PENTYL)-AMIDE I - 106
1rl4_A_871rl4   A     BRR(2R)-2-{[FORMYL(HYDROXY)AMINO]METHYL}HEXANOIC ACID G - 107
1rl4_A_871rl4   A     BRR(2R)-2-{[FORMYL(HYDROXY)AMINO]METHYL}HEXANOIC ACID L - 108
1rl4_A_871rl4   A     COCOBALT (II) ION S - 109
1rl4_A_871rl4   A     BRR(2R)-2-{[FORMYL(HYDROXY)AMINO]METHYL}HEXANOIC ACID S - 109
1sn4_A_191sn4   A     ACTACETATE ION N - 19
1sn4_A_191sn4   A     ACTACETATE ION E - 20
1sn4_A_191sn4   A     ACTACETATE ION K - 24
1sn4_A_191sn4   A     ACTACETATE ION T - 27
1sn4_A_191sn4   A     ACTACETATE ION D - 28
1sn4_A_191sn4   A     ACTACETATE ION A - 31
1sn4_A_191sn4   A     ACTACETATE ION E - 32
1sn4_A_191sn4   A     ACTACETATE ION W - 38
1yag_A_1371yag   A     MGMAGNESIUM ION Q - 137
1yag_A_1371yag   A     MGMAGNESIUM ION D - 154
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gpj_A_291gpj   A ACTRECOGNITION AND ACTIVE SITE, HERE OCCUPIED BY THE INHIBITOR GLUTAMYCINT - 47
1rkd_*_2021rkd   * AB1RESIDUES MAKING DIRECT HYDROGEN BONDS WITH ADP.T - 223

Clusters included in this Subclass
CLUSTER: HE.3.43
CLUSTER: HE.4.14
CLUSTER: HE.5.231