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Information on SUBCLASS 3.1.5
Subclass Accession number: 5454
Subclass: 3.1.5 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 16.2 +/- 16.1
Average RMSD (Å) : 0.580 +/- 0.249

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XXchXXh
(φψ)-conformation: aagpabb
Pattern: [AS]xxxx[ael]xx[AFV][DEGP]x[ILV][ikt]
Conservation:1.828-0.825-1.497-0.044-0.589-0.520-0.4811.152-0.0360.215-0.3021.736-0.637
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1d2n_A_5571d2n   A562574AKIAEESNFPFIKHHHHHHHT-SEEEaaaaaaavxabbb
1jw9_B_411jw9   B4759SQYLASAGVGNLTHHHHHHHT-SEEEaaaaaaagxabbb
1ne2_A_611ne2   A6375ACGSYLLGAESVTHHHHHHTTBSEEEaaaaaaavxabbb
1qyi_A_3511qyi   A351363AGELEAHHADYVIHHHHHHTT-SEEEaaaaaaalxabbb
1vhh_*_1591vhh   -163175ARLAVEAGFDWVYHHHHHHTT-SEEEaaaaaaagxabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1d2n_A_5571d2n   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER K - 557
1d2n_A_5571d2n   A     MGMAGNESIUM ION K - 557
1d2n_A_5571d2n   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER T - 558
1d2n_A_5571d2n   A     MGMAGNESIUM ION T - 558
1d2n_A_5571d2n   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER A - 559
1d2n_A_5571d2n   A     MGMAGNESIUM ION A - 559
1d2n_A_5571d2n   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER L - 560
1ne2_A_611ne2   A     MSESELENOMETHIONINE L - 62
1ne2_A_611ne2   A     MSESELENOMETHIONINE A - 71
1ne2_A_611ne2   A     MSESELENOMETHIONINE E - 72
1ne2_A_611ne2   A     MSESELENOMETHIONINE S - 73
1ne2_A_611ne2   A     MSESELENOMETHIONINE T - 75
1ne2_A_611ne2   A     MSESELENOMETHIONINE A - 76
1ne2_A_611ne2   A     MSESELENOMETHIONINE F - 77
1vhh_*_1591vhh   *     ZNZINC ION E - 177

Clusters included in this Subclass
CLUSTER: HE.3.134