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Information on SUBCLASS 3.2.2
Subclass Accession number: 5459
Subclass: 3.2.2 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 34

Average sequence ID (%) : 13.5 +/- 14.4
Average RMSD (Å) : 0.756 +/- 0.193

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: pXGXXhX
(φψ)-conformation: aalbpbb
Pattern: xxxxx[adegknqst]x[DEGKNS]x[adeknqst][ACFILPVY]xx
Conservation:-0.394-0.223-0.894-0.4570.0080.248-0.1783.141-0.5550.0220.214-0.604-0.328
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1avq_A_751avq   A90101TLFEFTSGVNVT.HHHHHHH---EE.aaaaaaavbxbb.
1cg2_A_3301cg2   A341353VAYYKEAGGTLGVHHHHHHTT---EEaaaaaaavbbbxb
1crl_*_1361crl   -139151ITKSIAMGKPIIHHHHHHHTT---EEaaaaaaavbxbxb
1cv8_*_671cv8   -7183IYFGQTQGRSPQLHHHHHHTT---EEaaaaaaavbbxbx
1edq_A_3311edq   A347359DQLSVETGRKYELHHHHHHHT---EEaaaaaaavxxbbb
1efv_A_1141efv   A121133PRVAAKLEVAPISHHHHHHHT---EEaaaaaaavbxxbb
1elj_A_2321elj   A232244INDVKKAGINFGVHHHHHHTT--EEEaaaaaaavxxbbb
1gud_A_141gud   A2436EDEAKTLGVSVDIHHHHHHHT--EEEaaaaaaavbbbbb
1j9b_A_141j9b   A1931LEMIRNSGTEPTIHHHHHHTT---EEaaaaaaavbxxxb
1kw3_B_691kw3   B7688ADKLRQAGVAFTRHHHHHHHT---EEaaaaaaavxxbbx
1l1y_A_6241l1y   A627639VYQAYLRGEAPVLHHHHHHTT---EEaaaaaaavbxxbb
1lkd_A_701lkd   A7789ADKLKQAGIAVTTHHHHHHTT---EEaaaaaaavxxbbx
1llf_A_1361llf   A139151VTKSVLMGKPIIHHHHHHHTT---EEaaaaaaavbxbbx
1lng_A_311lng   A3547EKALKKLGLEPKIHHHHHHTT---EEaaaaaaavxbwbx
1m1n_A_1631m1n   A168180KVKGAELSKTIVPHHHHHHHT--EEEaaaaaaalbxbbw
1nnf_A_101nnf   A1830KAFEQETGIKVTLHHHHHHS---EEEaaaaaaavxxbbx
1oc2_A_2011oc2   A205217QITNILAGIKPKLHHHHHHHT---EEaaaaaaavbxpbb
1ols_B_2301ols   B239251SMAKEKLGVSCEVHHHHHHH---EEEaaaaaaavxxbxb
1pb7_A_661pb7   A7284IKLARTMNFTYEVHHHHHHHT--EEEaaaaaaalbbbbb
1pxv_A_2861pxv   A290302IEYGKSQGRDIHYHHHHHHTT---EEaaaaaaavbxxbx
1qup_A_541qup   A5870INTLRNCGKDAIIHHHHHHTT---EEaaaaaaavbxxbp
1qyc_A_2241qyc   A229241ALWEKKIDKTLEKHHHHHHTTS--EEaaaaaaalbbxxb
1r0v_A_631r0v   A7082YEDLRDRGNKVKIHHHHHHTT---EEaaaaaaavxxbbx
1r13_A_1481r13   A155167ASIAKKYNNYVYLHHHHHHTTS-EEEaaaaaaalbxbxb
1reo_A_961reo   A99111REYIRKFGLQLNEHHHHHHTT--EEEaaaaaaavxxbbx
1ro2_A_421ro2   A4759AKWMLEHGFNIIPHHHHHHTT---EEaaaaaaavbxbbx
1sdo_A_971sdo   A101113KKVIEAAGKEALKHHHHHHTT---EEaaaaaaavbxbbx
1set_A_2881set   A303315EEILRLLELPYRLHHHHHHTT--EEEaaaaaaalbwbbb
1toa_A_2541toa   A260272RDAVQARGHVVQIHHHHHTTT---EEaaaaaaavbbbbx
1v39_*_731v39   -7991RDHFYNLGVIIKWHHHHHHTT---EEaaaaaaavxxbbb
1vsr_A_261vsr   A2941ASLLTGQGLAFRVHHHHHHTT---EEaaaaaaavxxbbb
1wdn_A_271wdn   A3345AAIAKELKLDYELHHHHHHHT--EEEaaaaaaavbbbbx
5nul_*_115nul   -2032AKGIIESGKDVNTHHHHHHTT---EEaaaaaaagbbbbb
6mht_A_1316mht   A137149KNTMNELDYSFHAHHHHHHTTB--EEaaaaaaavbxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1cv8_*_671cv8   *     E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE P - 67
1cv8_*_671cv8   *     E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE E - 69
1cv8_*_671cv8   *     E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE M - 70
1gud_A_141gud   A     ZNZINC ION S - 33
1gud_A_141gud   A     ZNZINC ION V - 34
1gud_A_141gud   A     ZNZINC ION D - 35
1j9b_A_141j9b   A     CZZTHIARSAHYDROXY-CYSTEINE T - 14
1j9b_A_141j9b   A     TASTRIHYDROXYARSENITE(III) T - 14
1j9b_A_141j9b   A     CZZTHIARSAHYDROXY-CYSTEINE S - 15
1j9b_A_141j9b   A     TASTRIHYDROXYARSENITE(III) S - 15
1j9b_A_141j9b   A     CZZTHIARSAHYDROXY-CYSTEINE R - 16
1j9b_A_141j9b   A     TASTRIHYDROXYARSENITE(III) R - 16
1j9b_A_141j9b   A     CZZTHIARSAHYDROXY-CYSTEINE N - 17
1oc2_A_2011oc2   A     TDXTHYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE F - 201
1oc2_A_2011oc2   A     TDXTHYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE I - 202
1oc2_A_2011oc2   A     TDXTHYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE R - 204
1oc2_A_2011oc2   A     TDXTHYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE Q - 205
1oc2_A_2011oc2   A     TDXTHYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE K - 216
1oc2_A_2011oc2   A     TDXTHYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE L - 217
1oc2_A_2011oc2   A     TDXTHYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE Y - 218
1qup_A_541qup   A     MSESELENOMETHIONINE I - 57
1qup_A_541qup   A     MSESELENOMETHIONINE L - 61
1r13_A_1481r13   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID A - 158
1r13_A_1481r13   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID K - 159
1r13_A_1481r13   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID N - 162
1r13_A_1481r13   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID N - 163
1r13_A_1481r13   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID Y - 164
1reo_A_961reo   A     NAGN-ACETYL-D-GLUCOSAMINE N - 110
1ro2_A_421ro2   A     ZNZINC ION W - 49
1ro2_A_421ro2   A     ZNZINC ION E - 52
1ro2_A_421ro2   A     ZNZINC ION H - 53
1v39_*_731v39   *     SAHS-ADENOSYL-L-HOMOCYSTEINE T - 73
1v39_*_731v39   *     SAHS-ADENOSYL-L-HOMOCYSTEINE H - 74
1v39_*_731v39   *     SAHS-ADENOSYL-L-HOMOCYSTEINE I - 75
1v39_*_731v39   *     SAHS-ADENOSYL-L-HOMOCYSTEINE I - 94
1v39_*_731v39   *     SAHS-ADENOSYL-L-HOMOCYSTEINE D - 95
5nul_*_115nul   *     FMNFLAVIN MONONUCLEOTIDE N - 11
5nul_*_115nul   *     FMNFLAVIN MONONUCLEOTIDE T - 12
5nul_*_115nul   *     FMNFLAVIN MONONUCLEOTIDE E - 13
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gud_A_141gud   A ZN3ZN BINDING SITE FOR CHAIN AD - 35

Clusters included in this Subclass
CLUSTER: HE.4.28
CLUSTER: HE.5.18
CLUSTER: HE.6.13