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Information on SUBCLASS 2.4.7
Subclass Accession number: 546
Subclass: 2.4.7 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0003677 (>50 %)  
Number of loops: 6

Average sequence ID (%) : 10.0 +/- 10.1
Average RMSD (Å) : 0.567 +/- 0.273

Consensus geometry
d (Å): 3 delta (°): 45-90 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: phpGXX
(φψ)-conformation: bbllbb
Pattern: [KSTY][ael][CENST][flvy][DEGNS][GN][cnqrs]x[hiwy]x[AILVY][agilt]x[apsv]
Conservation:0.039-0.3340.120-0.0850.5223.172-0.742-0.386-0.003-0.6700.303-0.814-0.573-0.549
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8d_*_3311a8d   -336349YVSYNNNEHIVGYPEEEETTEEEEEEEEbbbbllbxbxxbbx
1cvl_*_1961cvl   -196209TETVGGSQHLLYSWEEEETTEEEEEEEEbbbbvvbxbxbbbb
1f5a_A_1561f5a   A158171KLCFDGIEIDILFAEEEETTEEEEEEEEbbbbvvbxbbbxbb
1g3p_*_301g3p   -3043YANYEGCLWNATGVEEEETTEEEEEEEEbbxblvbxbbxbex
1s18_A_2871s18   A293306SEEDSGRVASYIMAEEEETTEEEEEEEEbbbblvxbbbbbbb
1uuz_A_441uuz   A4558SLSLEGQPYVLANSEEEETTEEEEEEEEbbbblvbwbbbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1f5a_A_1561f5a   A     3AT3'-DEOXYADENOSINE-5'-TRIPHOSPHATE V - 156
1f5a_A_1561f5a   A     MNMANGANESE (II) ION K - 158
1f5a_A_1561f5a   A     3AT3'-DEOXYADENOSINE-5'-TRIPHOSPHATE K - 158
1f5a_A_1561f5a   A     3POTRIPHOSPATE K - 158
1f5a_A_1561f5a   A     3POTRIPHOSPATE E - 165
1f5a_A_1561f5a   A     MNMANGANESE (II) ION D - 167
1f5a_A_1561f5a   A     3AT3'-DEOXYADENOSINE-5'-TRIPHOSPHATE D - 167
1f5a_A_1561f5a   A     3POTRIPHOSPATE D - 167
1f5a_A_1561f5a   A     3AT3'-DEOXYADENOSINE-5'-TRIPHOSPHATE L - 169
1g3p_*_301g3p   *     TRO2-HYDROXY-TRYPTOPHAN Y - 30
1g3p_*_301g3p   *     TRO2-HYDROXY-TRYPTOPHAN A - 31
1g3p_*_301g3p   *     TRO2-HYDROXY-TRYPTOPHAN N - 32
1g3p_*_301g3p   *     TRO2-HYDROXY-TRYPTOPHAN L - 37

Clusters included in this Subclass
CLUSTER: HA.2.42