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Information on SUBCLASS 3.3.3
Subclass Accession number: 5478
Subclass: 3.3.3 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 26

Average sequence ID (%) : 14.0 +/- 15.3
Average RMSD (Å) : 0.762 +/- 0.217

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: pXchpXh
(φψ)-conformation: aalpabb
Pattern: [acgikltv]xx[afgilmvwy]x[aekqrt][adekqt]x[dgknrs][acfilpvy][deknqrty]x[FILTVW][afgilmvy]
Conservation:-0.051-0.733-0.051-0.692-0.4240.4290.506-0.8751.423-0.4460.525-1.1942.437-0.855
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a2o_A_381a2o   A4154ARDLIKKFNPDVLTHHHHHHHH--SEEEaaaaaaaalxabbb
1doz_A_2351doz   A239252TRDLFEQKGYQAFVHHHHHHHH--SEEEaaaaaaaavpabbb
1dp4_A_641dp4   A6982AVDLKWEHSPAVFLHHHHHHHH--SEEEaaaaaaaalxabbb
1dz3_A_371dz3   A4053CLQMLEEKRPDILLHHHHHHHH--SEEEaaaaaaaalxabbx
1g71_A_561g71   A5972LEDYIRATSPYAVYHHHHHHHH--SEEEaaaaaaaalwabbb
1h0c_A_1361h0c   A139152VEEGLAQHKPVLLFHHHHHHHH--SEEEaaaaaaaalxabbb
1hp1_A_1921hp1   A200213IQELQQTEKPDIIIHHHHHHHT--SEEEaaaaaaaalxabbb
1j0h_A_3031j0h   A313326ATYWIREFDIDGWRHHHHHHHH---EEEaaaaaaaavxabbx
1jye_A_1631jye   A170183GVEHLVALGHQQIAHHHHHHHHT--SEEaaaaaaaagxabbb
1jys_A_521jys   A5972ATLLLEHCKPDVIIHHHHHHHH--SEEEaaaaaaaalxabbb
1k9s_A_661k9s   A7386TKELITDFGVKKIIHHHHHHHH---EEEaaaaaaaavxabbb
1leh_A_31leh   A316IFKYMEKYDYEQLVHHHHHHHHT--EEEaaaaaaaalxabbb
1meo_A_1201meo   A120133AHEQALETGVTVTGHHHHHHHHT-SEEEaaaaaaaavxabbe
1mvo_A_351mvo   A3851ALKKAETEKPDLIVHHHHHHHH--SEEEaaaaaaaalxabbb
1nat_*_361nat   -3952ALDIVTKERPDLVLHHHHHHHH--SEEEaaaaaaaalxabbb
1nnl_A_1571nnl   A162175IKLLKEKFHFKKIIHHHHHHHH--S-EEaaaaaaaalpabbb
1nul_A_401nul   A4356GALLARELGIRHVDHHHHHHHHT---EEaaaaaaaavxaxbb
1nv8_A_1061nv8   A113126ALELIRKYGIKTVAHHHHHHHHT--EEEaaaaaaaavxabbb
1pzx_A_2391pzx   A246259KQMIEETHGCTRFFHHHHHHHT---EEEaaaaaaaavxabbb
1qas_A_3261qas   A328341AYIRALCKGCRCLEHHHHHHHTT--EEEaaaaaaaavpabbb
1r5y_A_2651r5y   A267280DIVGAVERGIDMFDHHHHHHTTT--EEEgaaaaaaagxabbb
1rj9_A_2351rj9   A240253AKKFHEAVGLTGVIHHHHHHHH--SEEEaaaaaaaavxabbb
1rj9_B_1961rj9   B202215LARLKEVLGPDEVLHHHHHHHH--SEEEaaaaaaaavxabbb
1usl_A_931usl   A96109AALAREHNNAQLIGHHHHHHHH--SEEEaaaaaaaalxabbx
1vhw_A_671vhw   A7487VTELIKDYGVKKIIHHHHHHHH---EEEaaaaaaaavxabbb
2dnj_A_1402dnj   A151164YLDVQQKWHLNDVMHHHHHHHH----EEaaaaaaaalbaxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1doz_A_2351doz   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED Q - 236
1h0c_A_1361h0c   A     PLPPYRIDOXAL-5'-PHOSPHATE T - 154
1hp1_A_1921hp1   A     ZNZINC ION H - 217
1hp1_A_1921hp1   A     CO3CARBONATE ION H - 217
1jys_A_521jys   A     ADEADENINE S - 76
1jys_A_521jys   A     ADEADENINE A - 77
1jys_A_521jys   A     ADEADENINE G - 78
1k9s_A_661k9s   A     FM12-HYDROXYMETHYL-5-(7-METHYLAMINO-3H-PYRAZOLO[4,3-D] PYRIMIDIN-3-YL)-TETRAHYDRO-FURAN-3,4-DIOL I - 71
1k9s_A_661k9s   A     PO4PHOSPHATE ION R - 87
1k9s_A_661k9s   A     FM22-(7-AMINO-6-METHYL-3H-PYRAZOLO[4,3-D]PYRIMIDIN-3-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL R - 87
1k9s_A_661k9s   A     PO4PHOSPHATE ION V - 88
1k9s_A_661k9s   A     PO4PHOSPHATE ION G - 89
1k9s_A_661k9s   A     FM22-(7-AMINO-6-METHYL-3H-PYRAZOLO[4,3-D]PYRIMIDIN-3-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL G - 89
1k9s_A_661k9s   A     PO4PHOSPHATE ION S - 90
1k9s_A_661k9s   A     FM22-(7-AMINO-6-METHYL-3H-PYRAZOLO[4,3-D]PYRIMIDIN-3-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL S - 90
1k9s_A_661k9s   A     PO4PHOSPHATE ION C - 91
1k9s_A_661k9s   A     FM22-(7-AMINO-6-METHYL-3H-PYRAZOLO[4,3-D]PYRIMIDIN-3-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL C - 91
1k9s_A_661k9s   A     FM22-(7-AMINO-6-METHYL-3H-PYRAZOLO[4,3-D]PYRIMIDIN-3-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL G - 92
1k9s_A_661k9s   A     FM22-(7-AMINO-6-METHYL-3H-PYRAZOLO[4,3-D]PYRIMIDIN-3-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL A - 93
1mvo_A_351mvo   A     MNMANGANESE (II) ION D - 53
1nnl_A_1571nnl   A     CACALCIUM ION K - 158
1nnl_A_1571nnl   A     CACALCIUM ION G - 178
1nv8_A_1061nv8   A     SAMS-ADENOSYLMETHIONINE T - 106
1nv8_A_1061nv8   A     SAMS-ADENOSYLMETHIONINE D - 127
1nv8_A_1061nv8   A     SAMS-ADENOSYLMETHIONINE I - 128
1r5y_A_2651r5y   A     DQU2,6-DIAMINO-3H-QUINAZOLIN-4-ONE D - 280
1rj9_B_1961rj9   B     GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER V - 217
1rj9_A_2351rj9   A     GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER V - 254
1rj9_A_2351rj9   A     GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER T - 255
1usl_A_931usl   A     PO4PHOSPHATE ION H - 102
1vhw_A_671vhw   A     ADNADENOSINE I - 72
1vhw_A_671vhw   A     ADNADENOSINE R - 88
1vhw_A_671vhw   A     ADNADENOSINE G - 90
1vhw_A_671vhw   A     ADNADENOSINE S - 91
1vhw_A_671vhw   A     ADNADENOSINE C - 92
1vhw_A_671vhw   A     ADNADENOSINE G - 93
1vhw_A_671vhw   A     ADNADENOSINE A - 94
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1a2o_A_381a2o   A PONPHOSPHORYLATION SITED - 56

Clusters included in this Subclass
CLUSTER: HE.3.27
CLUSTER: HE.4.224