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Information on SUBCLASS 3.3.7
Subclass Accession number: 5482
Subclass: 3.3.7 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0016788 (>75 %)  
Number of loops: 5

Average sequence ID (%) : 13.0 +/- 12.3
Average RMSD (Å) : 0.880 +/- 0.130

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: phXhcXh
(φψ)-conformation: aalpabb
Pattern: [GILWY][gkl]x[FIV][EHKR]xx[ACKL]x[ekqs][AFIW]xx[DKT]xx[IT][IMTV][GIPV]x
Conservation:-0.844-0.620-1.0701.7301.130-0.8900.231-0.4670.034-0.2580.1971.012-1.2051.348-0.890-0.4351.7951.038-0.741-1.094
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b5t_A_1881b5t   A191210YLRFRDRCVSAGIDVEIIPGHHHHHHHHHHTT--S-EEEEaaaaaaaaaaavxabxxxxx
1k4k_A_171k4k   A2039LKPVETLANLIGLTRVTIIPHHHHHHHHHHH----EEEEEaaaaaaaaaaavxabbbxbx
1lar_A_17871lar   A17931812IGQVHKTKEQFGQDGPITVHHHHHHHHHHHTT--S-EEEEaaaaaaaaaaalxaxxxxbb
1nnl_A_1571nnl   A159178GKVIKLLKEKFHFKKIIMIGHHHHHHHHHHH--S-EEEEEaaaaaaaaaaalpabbbbbb
1nu0_A_421nu0   A4261WNIIERLLKEWQPDEIIVGLHHHHHHHHHHH--S-EEEEEaaaaaaaaaaalxabbbbxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1k4k_A_171k4k   A     XEXENON H - 19
1k4k_A_171k4k   A     XEXENON L - 20
1k4k_A_171k4k   A     XEXENON I - 37
1k4k_A_171k4k   A     XEXENON I - 38
1nnl_A_1571nnl   A     CACALCIUM ION K - 158
1nnl_A_1571nnl   A     CACALCIUM ION G - 178
1nu0_A_421nu0   A     MSESELENOMETHIONINE I - 45
1nu0_A_421nu0   A     MSESELENOMETHIONINE L - 48
1nu0_A_421nu0   A     MSESELENOMETHIONINE L - 49
1nu0_A_421nu0   A     MSESELENOMETHIONINE W - 52
1nu0_A_421nu0   A     MSESELENOMETHIONINE Q - 53
1nu0_A_421nu0   A     MSESELENOMETHIONINE P - 54
1nu0_A_421nu0   A     MSESELENOMETHIONINE D - 55
1nu0_A_421nu0   A     MSESELENOMETHIONINE E - 56
1nu0_A_421nu0   A     MSESELENOMETHIONINE I - 57
1nu0_A_421nu0   A     MSESELENOMETHIONINE I - 58
1nu0_A_421nu0   A     MSESELENOMETHIONINE V - 59
1nu0_A_421nu0   A     MSESELENOMETHIONINE L - 63

Clusters included in this Subclass
CLUSTER: HE.5.111