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Information on SUBCLASS 3.3.8
Subclass Accession number: 5483
Subclass: 3.3.8 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0016772 (>50 %)  
 Number of loops: 3

Average sequence ID (%) : 13.9 +/- 13.3
Average RMSD (Å) : 0.667 +/- 0.058

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 90-135 rho (°): 45-90
Consensus Sequence: XhpXXXX
(φψ)-conformation: aalpabb
Pattern: x[DGN][IL][IL]x[ALY][NQ][PT][DP]xxx
Conservation:-1.2120.0730.9740.976-0.845-0.9371.0291.0560.849-1.304-0.661-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1i6l_A_1311i6l   A131142ADILLYNTDIVPHHHHTTT-SEEEaaaaaalxabbx
1knx_A_761knx   A7788HNLLKLNPPAIIHHHHTT--S-EEaaaaaavxabbx
1vrt_A_5001vrt   A503513LGIIQAQPDQS.HHHHHT--SEE.aaaaaalxabb.
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1i6l_A_1311i6l   A     MSESELENOMETHIONINE A - 131
1i6l_A_1311i6l   A     MSESELENOMETHIONINE D - 132
1i6l_A_1311i6l   A     TYMTRYPTOPHANYL-5'AMP D - 132
1i6l_A_1311i6l   A     MSESELENOMETHIONINE I - 133
1i6l_A_1311i6l   A     TYMTRYPTOPHANYL-5'AMP I - 133
1i6l_A_1311i6l   A     MSESELENOMETHIONINE L - 134
1i6l_A_1311i6l   A     MSESELENOMETHIONINE L - 135
1i6l_A_1311i6l   A     MSESELENOMETHIONINE Y - 136
1i6l_A_1311i6l   A     MSESELENOMETHIONINE N - 137
1i6l_A_1311i6l   A     MSESELENOMETHIONINE D - 139
1i6l_A_1311i6l   A     MSESELENOMETHIONINE V - 141
1i6l_A_1311i6l   A     TYMTRYPTOPHANYL-5'AMP V - 141
1i6l_A_1311i6l   A     TYMTRYPTOPHANYL-5'AMP P - 142

Clusters included in this Subclass
CLUSTER: HE.5.335