Home

Classification

Query

Statistics

Contact

Links

Help

PDB code:

Information on SUBCLASS 3.5.2

Subclass Accession number: 5502 Subclass: 3.5.2 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 28 Average sequence ID (%) : 17.6 +/- 17.0 Average RMSD (Å) : 0.725 +/- 0.186 Consensus geometry d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 45-90

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a1v_A_213	1a1v	A	215	227	PAAYAAQGYKVLV	HHHHHTTT--EEE	aaaaaaavbxbbb
1ad1_A_186	1ad1	A	186	198	LDELVATEYPVLL	HHHHHTT-S-BEE	aaaaaaavxwbbb
1an1_I_24	1an1	I	24	36	SCIARCNGVSIKS	HHHHHTTT--EEE	aaaaaaalbxxab
1brw_A_91	1brw	A	96	108	GPLVASVGVPVAK	HHHHHTTT--EEE	aaaaaaagxxxbb
1cbf_*_79	1cbf	-	86	98	MLDRMREGKMVVR	HHHHHTTT--EEE	aaaaaaavxxbbb
1cc8_A_53	1cc8	A	57	69	LEKIKKTGKEVRS	HHHHHTTSS-EEE	aaaaaaavxxxab
1e5k_A_58	1e5k	A	58	69	QEIYQASGLKVI.	HHHHHTTS--EE.	aaaaaaavxxbb.
1eg7_A_1353	1eg7	A	1367	1379	IENIGKFGVPAVV	HHHHHTTT--EEE	aaaaaaavbxbbx
1eny_*_159	1eny	-	176	188	AREAGKYGVRSNL	HHHHHTTT-EEEE	aaaaaaavxxbbb
1ewk_A_165	1ewk	A	172	184	QNLLQLFDIPQIA	HHHHGGGT--EEE	aaaaaaalbxbbx
1fe0_A_48	1fe0	A	52	64	LATLKKTGKTVSY	HHHHHTTTS-EEE	aaaaaaavxxbbx
1fts_*_306	1fts	-	314	326	ARQFEQQGKSVML	HHHHHTTT--EEE	aaaaaaavbxbbb
1gc0_A_169	1gc0	A	173	185	AKIARKHGATVVV	HHHHGGGT-EEEE	aaaaaaalxxxbb
1gtz_A_33	1gtz	A	41	53	VKAAAAHGGTVDF	HHHHHTTT--EEE	aaaaaaavbbbbb
1hjr_A_77	1hjr	A	88	100	IVAAVNQELPVFE	HHHHHTTT--EEE	aaaaaaavxxxbx
1ibj_A_236	1ibj	A	240	252	SEMAHAQGALVLV	HHHHHTTT-EEEE	aaaaaaavbxbbb
1ii7_A_58	1ii7	A	68	80	LQIPKEHSIPVFA	HHHHHTTT--EEE	aaaaaaavxxbbb
1j8m_F_255	1j8m	F	259	271	LSAVAATGATIKF	HHHHHTTT--EEE	aaaaaaavxxxab
1lt8_A_164	1lt8	A	171	183	VETLIASGKPVAA	HHHHGGGTS-EEE	aaaaaaavxwbbb
1puj_A_65	1puj	A	72	84	KEHFENQGIRSLS	HHHHHTTT--EEE	aaaaaaavbxbbx
1rj9_A_115	1rj9	A	123	135	GRYYQNLGKKVMF	HHHHHTTT--EEE	aaaaaaavxxbbb
1srv_A_230	1srv	A	237	249	LEQVAQTGKPLLI	HHHHHTTT--EEE	aaaaaaavxwbbb
1tht_A_52	1tht	A	55	67	AEYLSTNGFHVFR	HHHHHTTT--EEE	aaaaaaagxxbbb
1uou_A_125	1uou	A	130	142	APALAACGCKVPM	HHHHHTTT-BEEE	aaaaaaavxbbwx
1vgy_A_266	1vgy	A	274	286	HAILDKHGVQYDL	HHHHHHTT--EEE	aaaaaaavxbbbb
1yaa_A_143	1yaa	A	144	156	MAIFENQGLKTAT	HHHHHTTT--EEE	aaaaaaavxxbbb
2gbp_*_73	2gbp	-	77	89	IEKARGQNVPVVF	HHHHHTTT--EEE	aaaaaaalxxbbx
2hgs_A_217	2hgs	A	224	236	ENELLARNIHVIR	HHHHHTTT--EEE	aaaaaaavbxbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1a1v_A_213	1a1v	A	CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE	L - 226
1brw_A_91	1brw	A	PO4PHOSPHATE ION	T - 91
1brw_A_91	1brw	A	PO4PHOSPHATE ION	T - 92
1brw_A_91	1brw	A	PO4PHOSPHATE ION	K - 108
1brw_A_91	1brw	A	PO4PHOSPHATE ION	M - 109
1brw_A_91	1brw	A	PO4PHOSPHATE ION	S - 110
1cbf_*_79	1cbf	*	PO4PHOSPHATE ION	G - 93
1cbf_*_79	1cbf	*	PO4PHOSPHATE ION	R - 98
1cbf_*_79	1cbf	*	PO4PHOSPHATE ION	V - 99
1cbf_*_79	1cbf	*	PO4PHOSPHATE ION	H - 100
1cc8_A_53	1cc8	A	HGMERCURY (II) ION	K - 65
1eny_*_159	1eny	*	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	M - 161
1eny_*_159	1eny	*	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	K - 165
1eny_*_159	1eny	*	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	V - 189
1eny_*_159	1eny	*	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	A - 190
1eny_*_159	1eny	*	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	A - 191
1ewk_A_165	1ewk	A	GLUGLUTAMIC ACID	S - 165
1ewk_A_165	1ewk	A	GLUGLUTAMIC ACID	S - 166
1fe0_A_48	1fe0	A	CDCADMIUM ION	K - 60
1gc0_A_169	1gc0	A	LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)	D - 186
1ibj_A_236	1ibj	A	PLPPYRIDOXAL-5'-PHOSPHATE	D - 253
1rj9_A_115	1rj9	A	MGMAGNESIUM ION	K - 115
1rj9_A_115	1rj9	A	GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER	K - 115
1rj9_A_115	1rj9	A	MGMAGNESIUM ION	T - 116
1rj9_A_115	1rj9	A	GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER	T - 116
1rj9_A_115	1rj9	A	MGMAGNESIUM ION	T - 117
1rj9_A_115	1rj9	A	GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER	T - 117
1rj9_A_115	1rj9	A	GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER	T - 118
1rj9_A_115	1rj9	A	GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER	K - 121
1yaa_A_143	1yaa	A	PLPPYRIDOXAL-5'-PHOSPHATE	H - 143
2hgs_A_217	2hgs	A	GSHGLUTHATHIONE	D - 219
2hgs_A_217	2hgs	A	GSHGLUTHATHIONE	Q - 220

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1cbf_*_79	1cbf	*	P-4PRECORRIN-4 BINDING SITE IN DEEP TROUGH. ALSO, LOCATION OF BOUND PHOSPHATE RESIDUE 401. PHOSPHATE PRESENT FROM CRYSTALLIZATION CONDITIONS.	L - 79
1cbf_*_79	1cbf	*	P-4PRECORRIN-4 BINDING SITE IN DEEP TROUGH. ALSO, LOCATION OF BOUND PHOSPHATE RESIDUE 401. PHOSPHATE PRESENT FROM CRYSTALLIZATION CONDITIONS.	R - 98

Clusters included in this Subclass

CLUSTER: HE.5.71

CLUSTER: HE.6.7

For any comment or web-related incidence, send an email to the webmaster.