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Information on SUBCLASS 3.5.8
Subclass Accession number: 5508
Subclass: 3.5.8 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 4

Average sequence ID (%) : 7.5 +/- 10.4
Average RMSD (Å) : 0.875 +/- 0.189

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: hXchXXX
(φψ)-conformation: aalppbb
Pattern: x[EGS][AFKV][ACL]x[AEQS]xxxx[ACLV][GKQR][AL]x[DG][GILV][KPQT]xx[ACLV]
Conservation:-0.9450.866-0.8690.794-0.7170.576-1.097-0.188-0.793-1.0970.3480.3480.880-0.9453.067-0.3370.1200.281-0.6410.348
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ewk_A_1651ewk   A165184SSVAIQVQNLLQLFDIPQIAHHHHHHHHHHHGGGT--EEEaaaaaaaaaaaaaalbxbbx
1ja9_A_1761ja9   A186205EGFCRAFAVDCGAKGVTVNCHHHHHHHHHHHGGGT-EEEEaaaaaaaaaaaaaavbxbbb
1jnr_A_321jnr   A3554CGAAYEAAYWAKLGGLKVTLHHHHHHHHHHHTTTT--EEEaaaaaaaaaaaaaalxxbbb
1moq_*_5231moq   -526545LEKLKSNIEEVRARGGQLYVHHHHHHHHHHTGGGT--EEEaaaaaaaaaaaaaavxbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ewk_A_1651ewk   A     GLUGLUTAMIC ACID S - 165
1ewk_A_1651ewk   A     GLUGLUTAMIC ACID S - 166
1ja9_A_1761ja9   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Y - 178
1ja9_A_1761ja9   A     PYQPYROQUILON Y - 178
1ja9_A_1761ja9   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE K - 182
1ja9_A_1761ja9   A     PYQPYROQUILON K - 182
1ja9_A_1761ja9   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE A - 207
1ja9_A_1761ja9   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE P - 208
1ja9_A_1761ja9   A     PYQPYROQUILON P - 208
1jnr_A_321jnr   A     FADFLAVIN-ADENINE DINUCLEOTIDE F - 32
1jnr_A_321jnr   A     FADFLAVIN-ADENINE DINUCLEOTIDE S - 33
1jnr_A_321jnr   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 34
1jnr_A_321jnr   A     FADFLAVIN-ADENINE DINUCLEOTIDE V - 55
1moq_*_5231moq   *     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID A - 547
1moq_*_5231moq   *     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID D - 548

Clusters included in this Subclass
CLUSTER: HE.6.302
CLUSTER: HE.7.161