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Information on SUBCLASS 2.4.12
Subclass Accession number: 551
Subclass: 2.4.12 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0016788 (>75 %)  
Number of loops: 3

Average sequence ID (%) : 8.3 +/- 16.1
Average RMSD (Å) : 0.567 +/- 0.231

Consensus geometry
d (Å): 3 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: XXpXpX
(φψ)-conformation: bbllbb
Pattern: x[IV]xx[NTY][STV][AKS]x[DNS][AN][NR]x
Conservation:-1.1062.017-0.658-0.546-0.433-0.321-0.097-0.9940.6880.5241.583-0.658
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a3k_*_1701a3k   -170181VIVCNTKLDNNWEEEEEEEETTEEbbbbbbbblvbx
1a8d_*_3311a8d   -332343FIKLYVSYNNNEEEEEEEEETTEExbbbbbbbllbx
1c8u_A_2451c8u   A248259SVESTSASSARGEEEEEEEETTEExbbbabbblvbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a3k_*_1701a3k   *     GALD-GALACTOSE V - 172
1a3k_*_1701a3k   *     NAGN-ACETYL-D-GLUCOSAMINE V - 172
1a3k_*_1701a3k   *     GALD-GALACTOSE C - 173
1a3k_*_1701a3k   *     GALD-GALACTOSE N - 174
1a3k_*_1701a3k   *     GALD-GALACTOSE W - 181
1a3k_*_1701a3k   *     NAGN-ACETYL-D-GLUCOSAMINE W - 181

Clusters included in this Subclass
CLUSTER: HA.3.128