Information on SUBCLASS 2.4.12 |
Subclass Accession number: 551
Subclass: 2.4.12 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0016788 (>75 %) |
Number of loops: 3 Average sequence ID (%) : 8.3 +/- 16.1 Average RMSD (Å) : 0.567 +/- 0.231 Consensus geometry
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Consensus Sequence: | XXpXpX |
(φψ)-conformation: | bbllbb |
Pattern: | x | [IV] | x | x | [NTY] | [STV] | [AKS] | x | [DNS] | [AN] | [NR] | x |
Conservation: | -1.106 | 2.017 | -0.658 | -0.546 | -0.433 | -0.321 | -0.097 | -0.994 | 0.688 | 0.524 | 1.583 | -0.658 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a3k_*_170 | 1a3k | - | 170 | 181 | VIVCNTKLDNNW | EEEEEEEETTEE | bbbbbbbblvbx |
1a8d_*_331 | 1a8d | - | 332 | 343 | FIKLYVSYNNNE | EEEEEEEETTEE | xbbbbbbbllbx |
1c8u_A_245 | 1c8u | A | 248 | 259 | SVESTSASSARG | EEEEEEEETTEE | xbbbabbblvbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1a3k_*_170 | 1a3k | * | GALD-GALACTOSE | V - 172 |
1a3k_*_170 | 1a3k | * | NAGN-ACETYL-D-GLUCOSAMINE | V - 172 |
1a3k_*_170 | 1a3k | * | GALD-GALACTOSE | C - 173 |
1a3k_*_170 | 1a3k | * | GALD-GALACTOSE | N - 174 |
1a3k_*_170 | 1a3k | * | GALD-GALACTOSE | W - 181 |
1a3k_*_170 | 1a3k | * | NAGN-ACETYL-D-GLUCOSAMINE | W - 181 |
Clusters included in this Subclass |
CLUSTER: HA.3.128 |