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Information on SUBCLASS 3.6.6
Subclass Accession number: 5515
Subclass: 3.6.6 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 7

Average sequence ID (%) : 25.8 +/- 28.2
Average RMSD (Å) : 0.514 +/- 0.234

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 45-90 rho (°): 180-225
Consensus Sequence: hppXXhX
(φψ)-conformation: aapaabb
Pattern: [ade][afv]xx[anv][afl]x[ads]x[gknr][fltvy]x
Conservation:1.9630.016-1.484-0.853-0.4520.678-0.5511.550-0.8660.245-0.163-0.084
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1eup_A_451eup   A4758EAKAALSDLRLSHHHHHHH-TTEEaaaaaaaxaaxx
1fep_A_181fep   A1829AAEQNLQAPGVSHHHHHTTSTTEEaaaaaaaxaabb
1itk_A_6461itk   A646657DFFVNLLDMGTEHHHHHHH-TTEEaaaaaaaxaabb
1jfb_A_481jfb   A5061DVCFVATSEKLSHHHHHHH-TTEEaaaaaaaxaabb
1mwv_A_6631mwv   A663674DFFVNLLDMGTEHHHHHHT-TTEEaaaaaaaxaabb
1q5d_A_551q5d   A5768DVSAVFRDERFAHHHHHHT-TTEEaaaaaaabaabx
1ub2_A_6371ub2   A637648DFFVNLTDMNYLHHHHHHT-TTEEaaaaaaaxaabb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1eup_A_451eup   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 52
1fep_A_181fep   A     MSESELENOMETHIONINE P - 26
1fep_A_181fep   A     MSESELENOMETHIONINE S - 29
1fep_A_181fep   A     MSESELENOMETHIONINE T - 30
1fep_A_181fep   A     MSESELENOMETHIONINE I - 31
1jfb_A_481jfb   A     GOLGLYCEROL V - 54
1jfb_A_481jfb   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 55
1jfb_A_481jfb   A     GOLGLYCEROL A - 55
1jfb_A_481jfb   A     GOLGLYCEROL T - 56
1jfb_A_481jfb   A     GOLGLYCEROL S - 57
1jfb_A_481jfb   A     GOLGLYCEROL E - 58
1jfb_A_481jfb   A     GOLGLYCEROL L - 60
1jfb_A_481jfb   A     GOLGLYCEROL S - 61
1q5d_A_551q5d   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 62

Clusters included in this Subclass
CLUSTER: HE.3.157
CLUSTER: HE.4.237