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PDB code:

Information on SUBCLASS 3.13.1

Subclass Accession number: 5541 Subclass: 3.13.1 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 7 Average sequence ID (%) : 16.9 +/- 18.1 Average RMSD (Å) : 0.557 +/- 0.162 Consensus geometry d (Å): 9 delta (°): 0-45 theta (°): 45-90 rho (°): 0-45

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1k6j_A_208	1k6j	A	208	218	PQKWNGHRIAL	HHHHTT-EEEE	aaaaxvxbbxx
1lst_*_106	1lst	-	106	116	LESLKGKHVGV	HHHHTT-EEEE	aaaapvxbbxb
1nni_1_91	1nni	1	91	101	SEQFKYKPVAL	HHHHTT-EEEE	aaaapvxwbbx
1ori_A_66	1ori	A	66	76	RHLFKDKVVLD	HHHHTT-EEEE	aaaaplbbbbb
1qs1_A_367	1qs1	A	371	381	EEQFLNTIKED	HHHHTT-EEEE	aaaaplbbbbb
1rkx_A_4	1rkx	A	4	14	NSFWQGKRVFV	HHHHTT-EEEE	aaaapvxxbbb
2aps_A_130	2aps	A	130	140	LDEVKGHSLMI	HHHHTTEEEEE	aaaaxvbbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1nni_1_91	1nni	1	MSESELENOMETHIONINE	F - 94
1nni_1_91	1nni	1	MSESELENOMETHIONINE	V - 99
1nni_1_91	1nni	1	MSESELENOMETHIONINE	L - 101
1nni_1_91	1nni	1	MSESELENOMETHIONINE	L - 102
1nni_1_91	1nni	1	MSESELENOMETHIONINE	A - 103
1nni_1_91	1nni	1	MSESELENOMETHIONINE	V - 104
1nni_1_91	1nni	1	FMNFLAVIN MONONUCLEOTIDE	V - 104
1ori_A_66	1ori	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	D - 76
1ori_A_66	1ori	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	V - 77
1rkx_A_4	1rkx	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	T - 15
2aps_A_130	2aps	A	CUCOPPER (II) ION	M - 139
2aps_A_130	2aps	A	CUCOPPER (II) ION	I - 140
2aps_A_130	2aps	A	CUCOPPER (II) ION	H - 141

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
2aps_A_130	2aps	A	ACTCOPPER AND ZINC ARE LIGATED BY THREE CONSERVED HISTIDINES EACH IN THE ACTIVE SITE OF EACH SUBUNIT.	H - 141

Clusters included in this Subclass

CLUSTER: HE.3.127

CLUSTER: HE.4.199

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